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    1700128F08Rik RIKEN cDNA 1700128F08 gene [ Mus musculus (house mouse) ]

    Gene ID: 76669, updated on 2-Nov-2024

    Summary

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    Official Symbol
    1700128F08Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700128F08 geneprovided by MGI
    Primary source
    MGI:MGI:1923919
    See related
    Ensembl:ENSMUSG00000121852 AllianceGenome:MGI:1923919
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in central nervous system and sensory organ. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 1.2) See more
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    Genomic context

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    See 1700128F08Rik in Genome Data Viewer
    Location:
    9 A1; 9 2.46 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (8221890..8241988)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (8221889..8241987)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene centrosomal protein 126 Neighboring gene STARR-seq mESC enhancer starr_23241 Neighboring gene angiopoietin-related protein 5 pseudogene Neighboring gene predicted gene 7495 Neighboring gene microRNA 1899 Neighboring gene STARR-seq mESC enhancer starr_23245 Neighboring gene STARR-seq mESC enhancer starr_23246 Neighboring gene STARR-seq mESC enhancer starr_23247 Neighboring gene transient receptor potential cation channel, subfamily C, member 6 Neighboring gene STARR-seq mESC enhancer starr_23248 Neighboring gene STARR-seq mESC enhancer starr_23249 Neighboring gene predicted gene, 32014

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. McKee AE, et al. BMC Dev Biol, 2005 Jul 20. PMID 16033648, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • U1-snRNP binding protein homolog pseudogene
    • small nuclear ribonucleoprotein 35 (U11/U12) pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033618.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC155907, AK007310
      Related
      ENSMUST00000034483.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      8221890..8241988
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_006500.1: Suppressed sequence

      Description
      NG_006500.1: This RefSeq was permanently suppressed because there is sufficient evidence that this locus is transcribed.

    2. NM_029697.1: Suppressed sequence

      Description
      NM_029697.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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