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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001163489.2 → NP_001156961.1 semaphorin-4A precursor
See identical proteins and their annotated locations for NP_001156961.1
Status: VALIDATED
- Source sequence(s)
-
AC102388
- Consensus CDS
-
CCDS17475.1
- UniProtKB/Swiss-Prot
- D3Z5L2, Q62178
- UniProtKB/TrEMBL
-
D3YWV5
- Related
- ENSMUSP00000125909.2, ENSMUST00000166237.8
- Conserved Domains (4) summary
-
- smart00423
Location:496 → 540
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:572 → 580
- Ig; Ig strand B [structural motif]
- cl11960
Location:570 → 637
- Ig; Immunoglobulin domain
- cl15693
Location:55 → 495
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
NM_001163490.2 → NP_001156962.1 semaphorin-4A precursor
See identical proteins and their annotated locations for NP_001156962.1
Status: VALIDATED
- Source sequence(s)
-
AC102388
- Consensus CDS
-
CCDS17475.1
- UniProtKB/Swiss-Prot
- D3Z5L2, Q62178
- UniProtKB/TrEMBL
-
D3YWV5
- Related
- ENSMUSP00000128510.2, ENSMUST00000165898.8
- Conserved Domains (4) summary
-
- smart00423
Location:496 → 540
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:572 → 580
- Ig; Ig strand B [structural motif]
- cl11960
Location:570 → 637
- Ig; Immunoglobulin domain
- cl15693
Location:55 → 495
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
NM_001163491.2 → NP_001156963.1 semaphorin-4A precursor
See identical proteins and their annotated locations for NP_001156963.1
Status: VALIDATED
- Source sequence(s)
-
AC102388
- Consensus CDS
-
CCDS17475.1
- UniProtKB/Swiss-Prot
- D3Z5L2, Q62178
- UniProtKB/TrEMBL
-
D3YWV5
- Related
- ENSMUSP00000128887.2, ENSMUST00000169222.8
- Conserved Domains (4) summary
-
- smart00423
Location:496 → 540
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:572 → 580
- Ig; Ig strand B [structural motif]
- cl11960
Location:570 → 637
- Ig; Immunoglobulin domain
- cl15693
Location:55 → 495
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
NM_001428657.1 → NP_001415586.1 semaphorin-4A precursor
Status: VALIDATED
- Source sequence(s)
-
AC102388
- UniProtKB/Swiss-Prot
- D3Z5L2, Q62178
- UniProtKB/TrEMBL
-
D3YWV5
-
NM_001428658.1 → NP_001415587.1 semaphorin-4A precursor
Status: VALIDATED
- Source sequence(s)
-
AC102388
- UniProtKB/Swiss-Prot
- D3Z5L2, Q62178
- UniProtKB/TrEMBL
-
D3YWV5
-
NM_013658.3 → NP_038686.3 semaphorin-4A precursor
See identical proteins and their annotated locations for NP_038686.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript. All four variants encode the same protein.
- Source sequence(s)
-
AK077976, AK153164, BY201883
- Consensus CDS
-
CCDS17475.1
- UniProtKB/Swiss-Prot
- D3Z5L2, Q62178
- UniProtKB/TrEMBL
-
D3YWV5
- Related
- ENSMUSP00000029700.6, ENSMUST00000029700.12
- Conserved Domains (4) summary
-
- smart00423
Location:496 → 540
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:572 → 580
- Ig; Ig strand B [structural motif]
- cl11960
Location:570 → 637
- Ig; Immunoglobulin domain
- cl15693
Location:55 → 495
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000069.7 Reference GRCm39 C57BL/6J
- Range
-
88343266..88368500 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036162974.1 → XP_036018867.1 semaphorin-4A isoform X3
- Conserved Domains (4) summary
-
- smart00423
Location:496 → 540
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:572 → 580
- Ig; Ig strand B [structural motif]
- cl11960
Location:570 → 637
- Ig; Immunoglobulin domain
- cl15693
Location:55 → 495
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
XM_006501190.4 → XP_006501253.1 semaphorin-4A isoform X4
See identical proteins and their annotated locations for XP_006501253.1
- UniProtKB/TrEMBL
-
D3YWV5
- Conserved Domains (3) summary
-
- smart00423
Location:327 → 371
- PSI; domain found in Plexins, Semaphorins and Integrins
- cl11960
Location:396 → 468
- Ig; Immunoglobulin domain
- cl15693
Location:1 → 326
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
XM_036162971.1 → XP_036018864.1 semaphorin-4A isoform X2
- UniProtKB/TrEMBL
-
D3YWV5
- Conserved Domains (4) summary
-
- smart00423
Location:520 → 564
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:596 → 604
- Ig; Ig strand B [structural motif]
- cl11960
Location:594 → 661
- Ig; Immunoglobulin domain
- cl15693
Location:79 → 519
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
XM_036162972.1 → XP_036018865.1 semaphorin-4A isoform X3
- UniProtKB/Swiss-Prot
- D3Z5L2, Q62178
- UniProtKB/TrEMBL
-
D3YWV5
- Conserved Domains (4) summary
-
- smart00423
Location:496 → 540
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:572 → 580
- Ig; Ig strand B [structural motif]
- cl11960
Location:570 → 637
- Ig; Immunoglobulin domain
- cl15693
Location:55 → 495
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
XM_006501187.4 → XP_006501250.1 semaphorin-4A isoform X1
- Conserved Domains (3) summary
-
- smart00423
Location:534 → 578
- PSI; domain found in Plexins, Semaphorins and Integrins
- cl11960
Location:603 → 675
- Ig; Immunoglobulin domain
- cl15693
Location:93 → 533
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
XM_006501189.3 → XP_006501252.1 semaphorin-4A isoform X3
See identical proteins and their annotated locations for XP_006501252.1
- UniProtKB/Swiss-Prot
- D3Z5L2, Q62178
- UniProtKB/TrEMBL
-
D3YWV5
- Conserved Domains (4) summary
-
- smart00423
Location:496 → 540
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:572 → 580
- Ig; Ig strand B [structural motif]
- cl11960
Location:570 → 637
- Ig; Immunoglobulin domain
- cl15693
Location:55 → 495
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
XM_011240051.3 → XP_011238353.1 semaphorin-4A isoform X3
- Conserved Domains (4) summary
-
- smart00423
Location:496 → 540
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:572 → 580
- Ig; Ig strand B [structural motif]
- cl11960
Location:570 → 637
- Ig; Immunoglobulin domain
- cl15693
Location:55 → 495
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
XM_006501191.4 → XP_006501254.1 semaphorin-4A isoform X4
See identical proteins and their annotated locations for XP_006501254.1
- UniProtKB/TrEMBL
-
D3YWV5
- Conserved Domains (3) summary
-
- smart00423
Location:327 → 371
- PSI; domain found in Plexins, Semaphorins and Integrins
- cl11960
Location:396 → 468
- Ig; Immunoglobulin domain
- cl15693
Location:1 → 326
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
XM_006501188.5 → XP_006501251.1 semaphorin-4A isoform X2
- UniProtKB/TrEMBL
-
D3YWV5
- Conserved Domains (4) summary
-
- smart00423
Location:520 → 564
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:596 → 604
- Ig; Ig strand B [structural motif]
- cl11960
Location:594 → 661
- Ig; Immunoglobulin domain
- cl15693
Location:79 → 519
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
XM_036162975.1 → XP_036018868.1 semaphorin-4A isoform X5
- UniProtKB/TrEMBL
-
D3YWV5
- Conserved Domains (4) summary
-
- smart00423
Location:305 → 349
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00096
Location:381 → 389
- Ig; Ig strand B [structural motif]
- cl11960
Location:379 → 446
- Ig; Immunoglobulin domain
- cl15693
Location:1 → 304
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins