NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001256171.2 → NP_001243100.1 zinc finger protein 85 isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (c).
- Source sequence(s)
-
AC008739, BC036394, BC047646, BP199573, DC358791
- UniProtKB/TrEMBL
-
Q49A12
- Conserved Domains (5) summary
-
- smart00349
Location:4 → 64
- KRAB; krueppel associated box
- COG5048
Location:174 → 588
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:514 → 534
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam01352
Location:4 → 43
- KRAB; KRAB box
- pfam13465
Location:582 → 606
- zf-H2C2_2; Zinc-finger double domain
-
NM_001256172.2 → NP_001243101.1 zinc finger protein 85 isoform b
See identical proteins and their annotated locations for NP_001243101.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 3' UTR and 3' coding region, compared to variant 3, resulting in an isoform (b) that has a distinct C-terminus and is significantly shorter than isoform c.
- Source sequence(s)
-
AC008739, BC068066, BM755583, BP199573
- Consensus CDS
-
CCDS58657.1
- UniProtKB/Swiss-Prot
-
Q03923
- Related
- ENSP00000300540.2, ENST00000300540.7
- Conserved Domains (3) summary
-
- smart00349
Location:4 → 64
- KRAB; krueppel associated box
- pfam01352
Location:4 → 43
- KRAB; KRAB box
- cl19880
Location:50 → 68
- ROS_MUCR; ROS/MUCR transcriptional regulator protein
-
NM_001256173.2 → NP_001243102.1 zinc finger protein 85 isoform d
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 5' coding region, uses a downstream start codon, and lacks an in-frame exon in the 3' coding region, compared to variant 3. The encoded isoform (d) is shorter at the N-terminus, compared to isoform c.
- Source sequence(s)
-
AC008739, BC036394, BC047646, BP199573, DB119881
- UniProtKB/TrEMBL
-
Q49A12
- Conserved Domains (3) summary
-
- COG5048
Location:80 → 487
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:420 → 440
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:488 → 512
- zf-H2C2_2; Zinc-finger double domain
-
NM_003429.5 → NP_003420.2 zinc finger protein 85 isoform a
See identical proteins and their annotated locations for NP_003420.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) lacks an alternate in-frame exon in the 3' coding region, compared to variant 3, resulting in an isoform (a) that is shorter than isoform c.
- Source sequence(s)
-
AC008739, BC047646, BP199573, DB524732, U35376
- Consensus CDS
-
CCDS32977.1
- UniProtKB/Swiss-Prot
- B9ZVP4, Q03923, Q6NVI0
- Related
- ENSP00000329793.7, ENST00000328178.13
- Conserved Domains (5) summary
-
- smart00349
Location:4 → 64
- KRAB; krueppel associated box
- COG5048
Location:144 → 558
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:484 → 504
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam01352
Location:4 → 43
- KRAB; KRAB box
- pfam13465
Location:552 → 576
- zf-H2C2_2; Zinc-finger double domain
RNA
-
NR_045830.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) contains alternate exon structure at its 5' and 3' regions, compared to variant 3. This variant is represented as non-coding because the use of the 5'-most supported start codon, as used in variant 3, results in only a 10 aa ORF, and the transcript does not contain any other supported ORF that is likely to be translated.
- Source sequence(s)
-
AC008739, BC008688, BC068066, BP199573
- Related
-
ENST00000596476.1