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    PGM5P2 phosphoglucomutase 5 pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 595135, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PGM5P2provided by HGNC
    Official Full Name
    phosphoglucomutase 5 pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:18965
    See related
    Ensembl:ENSG00000290923 AllianceGenome:HGNC:18965
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in prostate (RPKM 12.2), esophagus (RPKM 9.3) and 17 other tissues See more
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    Genomic context

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    See PGM5P2 in Genome Data Viewer
    Location:
    9p11.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (41007011..41074625, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (42220387..42287983)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (69080240..69147854, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak7256 silencer Neighboring gene microRNA 1299 Neighboring gene uncharacterized LOC107986997 Neighboring gene NANOG hESC enhancer GRCh37_chr9:68695497-68695998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:69048303-69048804 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:68712489-68713157 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:68725219-68725948 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28425 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28426 Neighboring gene FSHD region gene 1 family member H, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19920 Neighboring gene uncharacterized LOC124902161 Neighboring gene uncharacterized LOC105376058 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:69179459-69180234 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:69180235-69181009 Neighboring gene long intergenic non-protein coding RNA 3025

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel human phosphoglucomutase (PGM5) maps to the centromeric region of chromosome 9. Edwards YH, et al. Genomics, 1995 Nov 20. PMID 8586438
    2. Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis. Zhang Y, et al. Arthritis Res Ther, 2016 Oct 6. PMID 27716329, Free PMC Article
    3. Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions. Fan Y, et al. Genome Res, 2002 Nov. PMID 12421752, Free PMC Article
    4. Diverse fates of paralogs following segmental duplication of telomeric genes. Wong A, et al. Genomics, 2004 Aug. PMID 15233989
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002836.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353763, BC007887, BX255923
      Related
      ENST00000613141.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      41007011..41074625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      42220387..42287983
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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