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    LINC03019 long intergenic non-protein coding RNA 3019 [ Homo sapiens (human) ]

    Gene ID: 340357, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC03019provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3019provided by HGNC
    Primary source
    HGNC:HGNC:27982
    See related
    Ensembl:ENSG00000254813 AllianceGenome:HGNC:27982
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC03019 in Genome Data Viewer
    Location:
    8p23.1-p22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (12765849..12811478, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (13031977..13077651, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (12623358..12668987, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27042 Neighboring gene microRNA 5692a-2 Neighboring gene microRNA 3926-1 Neighboring gene microRNA 3926-2 Neighboring gene LON peptidase N-terminal domain and ring finger 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18950 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18951 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:12612250-12612440 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12612509-12613328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27043 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27045 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12651516-12652033 Neighboring gene long intergenic non-protein coding RNA 681 Neighboring gene uncharacterized LOC105379289 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12726438-12727079 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12758236-12758737 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12799399-12799938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12808376-12808876 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18955 Neighboring gene regulator of solute carriers 1 pseudogene Neighboring gene tRNA methyltransferase 9B (putative)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Long Non-Coding RNA RP11-252C15.1 Is a Potential Biomarker of Prognosis and Hallmark for Leukemogenesis in Children with B-Cell Precursor Acute Lymphoblastic Leukemia. Pan L, et al. Acta Haematol, 2024. PMID 38527424
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • RP11-252C15.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015383.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123777, BC128096

    2. NR_152742.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123777
      Related
      ENST00000534827.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      12765849..12811478 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_018654717.1 Reference GRCh38.p14 PATCHES

      Range
      5961187..6006851 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      13031977..13077651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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