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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001185095.2 → NP_001172024.1 allograft inflammatory factor 1-like isoform 3
See identical proteins and their annotated locations for NP_001172024.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) represents the longest transcript and it encodes the longest protein (isoform 3).
- Source sequence(s)
-
AL157938, KF458943
- Consensus CDS
-
CCDS55348.1
- UniProtKB/Swiss-Prot
-
Q9BQI0
- Related
- ENSP00000361383.3, ENST00000372309.7
- Conserved Domains (1) summary
-
- cd00051
Location:78 → 138
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
-
NM_001185096.2 → NP_001172025.1 allograft inflammatory factor 1-like isoform 4
See identical proteins and their annotated locations for NP_001172025.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an alternate coding region segment and uses a different splice site which changes the reading frame, compared to variant 3. The resulting protein (isoform 4) is shorter and has a distinct C-terminus when it is compared to isoform 3.
- Source sequence(s)
-
AL157938, KF458943
- Consensus CDS
-
CCDS55349.1
- UniProtKB/TrEMBL
-
Q5JUP3
- Related
- ENSP00000361374.1, ENST00000372300.5
- Conserved Domains (1) summary
-
- cl08302
Location:52 → 95
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
-
NM_031426.4 → NP_113614.1 allograft inflammatory factor 1-like isoform 1
See identical proteins and their annotated locations for NP_113614.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) lacks an alternate coding region segment, compared to variant 3. The resulting protein (isoform 1) is shorter when it is compared to isoform 3.
- Source sequence(s)
-
AL157938, KF458943
- Consensus CDS
-
CCDS6939.1
- UniProtKB/Swiss-Prot
- B2RBC4, Q6ZR40, Q8NAX7, Q8WU47, Q9BQI0, Q9H9G0
- Related
- ENSP00000247291.3, ENST00000247291.8
- Conserved Domains (1) summary
-
- cl08302
Location:52 → 112
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
RNA
-
NR_033701.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate coding segment and uses a different splice site in the 5' coding region which changes the reading frame, compared to variant 3. This variant is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 3, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL157938, KF458943
- Related
-
ENST00000372314.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
131096531..131123144
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017015177.2 → XP_016870666.1 allograft inflammatory factor 1-like isoform X1
- UniProtKB/TrEMBL
-
B7Z6K5
- Conserved Domains (1) summary
-
- cd00051
Location:57 → 117
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
143304798..143331382
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054363924.1 → XP_054219899.1 allograft inflammatory factor 1-like isoform X1
- UniProtKB/TrEMBL
-
B7Z6K5
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001002260.1: Suppressed sequence
- Description
- NM_001002260.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.