ABCC6P1 ATP binding cassette subfamily C member 6 pseudogene 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: ABCC6P1provided by HGNC
Official Full Name: ATP binding cassette subfamily C member 6 pseudogene 1provided by HGNC
Primary source: HGNC:HGNC:33352
See related: Ensembl:ENSG00000291057 AllianceGenome:HGNC:33352
Gene type: pseudo
RefSeq status: PROVISIONAL
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Biased expression in liver (RPKM 11.4), kidney (RPKM 6.4) and 9 other tissues See more
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Genomic context

Location:: 16p12.3

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	16	NC_000016.10 (18571248..18598289)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	16	NC_060940.1 (18502427..18529473)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	16	NC_000016.9 (18582570..18609611)

Chromosome 16 - NC_000016.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Tissue-specific circular RNA induction during human fetal development
Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
BioProject: PRJNA270632
Publication: PMID 26076956
Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Targeted knockdown of the transcribed pseudogene ABCC6P1 resulted in a significant reduction of ABCC6 mRNA expression levels.
Title: The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference.

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

G43581 (e-PCR)
- UniSTS:95027

RH74970 (e-PCR)
- UniSTS:88431

RH119438 (e-PCR)
- UniSTS:132979

Other Names

ATP binding cassette subfamily C member 6 pseudogene 1 (functional)
ATP-binding cassette, sub-family C, member 6 pseudogene 1 (functional)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.