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    VPS13C-DT VPS13C divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101928907, updated on 10-Dec-2024

    Summary

    Official Symbol
    VPS13C-DTprovided by HGNC
    Official Full Name
    VPS13C divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55425
    See related
    AllianceGenome:HGNC:55425
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See VPS13C-DT in Genome Data Viewer
    Location:
    15q22.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (62060503..62062434)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (59864475..59866406)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (62352702..62354633)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2349 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:62119811-62120312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:62120313-62120812 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:62122812-62123677 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:62123678-62124542 Neighboring gene uncharacterized LOC124903501 Neighboring gene vacuolar protein sorting 13 homolog C Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9520 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9521 Neighboring gene Sharpr-MPRA regulatory region 14002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:62359400-62359915 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6503 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6504 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6505 Neighboring gene C2 calcium dependent domain containing 4A Neighboring gene nucleophosmin 1 pseudogene 47

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135690.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104590, BC034325, DA068710

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      62060503..62062434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      59864475..59866406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)