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    Polynucleotide adenylyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816265, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Polynucleotide adenylyltransferase family protein
    Primary source
    TAIR:AT2G17580
    Locus tag
    AT2G17580
    See related
    Araport:AT2G17580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGS1; ahg2-1 suppressor 1; MJB20.14; MJB20_14
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (7646372..7650387)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene high mobility group B4 Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A poly(A)-specific ribonuclease directly regulates the poly(A) status of mitochondrial mRNA in Arabidopsis. Hirayama T, et al. Nat Commun, 2013. PMID 23912222
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_127312.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial mRNA polyadenylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Polynucleotide adenylyltransferase family protein
    NP_179349.2
    • Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT1G28090.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7646372..7650387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127312.3 → NP_179349.2  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179349.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EYS1, F4INK3
      Conserved Domains (2) summary
      cd05398
      Location:80 → 231
      NT_ClassII-CCAase; Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes
      pfam12627
      Location:264 → 327
      PolyA_pol_RNAbd; Probable RNA and SrmB- binding site of polymerase A
    Nucleotide Protein
    Heading Accession and Version

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