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    CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842780, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CP5
    Official Full Name
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    Primary source
    TAIR:AT1G64720
    Locus tag
    AT1G64720
    See related
    Araport:AT1G64720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13O11.4; F13O11_4
    Summary
    membrane related protein CP5
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    Genomic context

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    See CP5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (24046553..24048822, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene branchless trichome Neighboring gene DUF4228 domain protein Neighboring gene GroES-like zinc-binding alcohol dehydrogenase family protein Neighboring gene miscRNA Neighboring gene alpha-1 tubulin Neighboring gene ncRNA Neighboring gene deletion of SUV3 suppressor 1(I)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization of the cold- and heat-induced Arabidopsis PXL1 gene and its potential role in transduction pathways under temperature fluctuations. Jung CG, et al. J Plant Physiol, 2015 Mar 15. PMID 25602612
    2. Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Szponarski W, et al. Proteomics, 2004 Feb. PMID 14760709
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105147.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    NP_176653.1
    • CP5; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT5G54170.1); Has 365 Blast hits to 364 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24046553..24048822 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105147.4 → NP_176653.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176653.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8L7P8, Q9XIR9
      Conserved Domains (1) summary
      cd08870
      Location:89 → 297
      START_STARD2_7-like; Lipid-binding START domain of mammalian STARD2, -7, and related proteins
    Nucleotide Protein
    Heading Accession and Version

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