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    TRO TRAUCO [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841570, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRO
    Official Full Name
    TRAUCO
    Primary source
    TAIR:AT1G51450
    Locus tag
    AT1G51450
    See related
    Araport:AT1G51450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS Ash2 RELATIVE; ASH2R; F5D21.18; F5D21_18; TRAUCO
    Summary
    Nuclear protein required for early embryogenesis. Encodes a structural core component of a COMPASS-like H3K4 histone methylation complex that is also involved in the timing of the floral transition and in leaf morphogenesis. Mutants are decreased in H3K4 histone trimethylation.
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    Genomic context

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    See TRO in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (19074328..19076545)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cTAGE family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ABC-2 type transporter family protein Neighboring gene beta glucosidase 35

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TRAUCO, a Trithorax-group gene homologue, is required for early embryogenesis in Arabidopsis thaliana. Aquea F, et al. J Exp Bot, 2010 Feb. PMID 20118203, Free PMC Article
    2. Arabidopsis COMPASS-like complexes mediate histone H3 lysine-4 trimethylation to control floral transition and plant development. Jiang D, et al. PLoS Genet, 2011 Mar. PMID 21423667, Free PMC Article
    3. Transcription factor interaction with COMPASS-like complex regulates histone H3K4 trimethylation for specific gene expression in plants. Song ZT, et al. Proc Natl Acad Sci U S A, 2015 Mar 3. PMID 25730865, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AT1G51450(TRAUCO) is required for early embryogenesis.
      Title: TRAUCO, a Trithorax-group gene homologue, is required for early embryogenesis in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104023.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chromatin DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables histone H3K4 methyltransferase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within simple leaf morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRAUCO
    NP_175556.1
    • TRAUCO (TRO); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: histone methylation, embryo development; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SPla/RYanodine receptor subgroup (InterPro:IPR018355), B302 (SPRY)-like (InterPro:IPR001870), SPla/RYanodine receptor SPRY (InterPro:IPR003877); Has 2366 Blast hits to 2103 proteins in 282 species: Archae - 12; Bacteria - 162; Metazoa - 1213; Fungi - 403; Plants - 173; Viruses - 13; Other Eukaryotes - 390 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19074328..19076545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104023.3 → NP_175556.1  TRAUCO [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175556.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C8J7
      UniProtKB/TrEMBL
      A0A654ET96
      Conserved Domains (1) summary
      cd12872
      Location:284 → 471
      SPRY_Ash2; SPRY domain in Ash2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8J7.1

    Gene LinkOut

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