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    PHR1 photolyase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837792, updated on 18-Sep-2024

    Summary

    Official Symbol
    PHR1
    Official Full Name
    photolyase 1
    Primary source
    TAIR:AT1G12370
    Locus tag
    AT1G12370
    See related
    Araport:AT1G12370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O11.9; F5O11_9; photolyase 1; TYPE II CPD PHOTOLYASE; UV RESISTANCE 2; UVR2
    Summary
    encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity, is sensitive to UV-B and is an allele
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    Genomic context

    See PHR1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (4206360..4208999, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cornichon family protein Neighboring gene 4-phospho-panto-thenoylcysteine synthetase Neighboring gene Sec1/munc18-like (SM) proteins superfamily Neighboring gene uncharacterized protein Neighboring gene Cornichon family protein Neighboring gene Nucleotide excision repair, TFIIH, subunit TTDA

    Bibliography

    General gene information

    NM_001332032.1
    NM_101109.1
    NM_179320.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast  
    located_in cytoplasm  
    located_in plastid  

    General protein information

    Preferred Names
    photolyase 1
    NP_563906.1
    • photolyase 1 (PHR1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 1792 Blast hits to 1788 proteins in 474 species: Archae - 23; Bacteria - 644; Metazoa - 122; Fungi - 53; Plants - 107; Viruses - 39; Other Eukaryotes - 804 (source: NCBI BLink).
    NP_849651.1
    • photolyase 1 (PHR1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 2452 Blast hits to 2448 proteins in 660 species: Archae - 33; Bacteria - 979; Metazoa - 129; Fungi - 60; Plants - 123; Viruses - 39; Other Eukaryotes - 1089 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4206360..4208999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179320.2 → NP_849651.1  photolyase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849651.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O24374, Q94CC5, Q9LNA9, Q9SB00
      UniProtKB/TrEMBL
      A0A178WLR2, A0A5S9U2T1
      Conserved Domains (1) summary
      TIGR00591
      Location:5 → 467
      phr2; photolyase PhrII
    2. NM_001332032.1 → NP_001321694.1  photolyase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLR2, A0A1P8ARP1
    3. NM_101109.1 → NP_563906.1  photolyase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563906.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLR2
      Conserved Domains (2) summary
      TIGR00591
      Location:5 → 461
      phr2; photolyase PhrII
      pfam00875
      Location:30 → 193
      DNA_photolyase; DNA photolyase
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