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    MATE efflux family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821204, updated on 18-Sep-2024

    Summary

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    Official Full Name
    MATE efflux family protein
    Primary source
    TAIR:AT3G03620
    Locus tag
    AT3G03620
    See related
    Araport:AT3G03620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12J13.10; T12J13_10
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (873749..876800, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ELMO/CED-12 family protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene cysteine synthase 26 Neighboring gene beta glucosidase 25 Neighboring gene Exostosin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337478.1
    NM_111233.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables xenobiotic transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in xenobiotic detoxification by transmembrane export across the plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    MATE efflux family protein
    NP_187012.2
    • MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G17700.1); Has 8317 Blast hits to 8249 proteins in 1758 species: Archae - 126; Bacteria - 5711; Metazoa - 138; Fungi - 320; Plants - 1334; Viruses - 0; Other Eukaryotes - 688 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      873749..876800 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111233.4 → NP_187012.2  MATE efflux family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187012.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J158, Q9SS64
      UniProtKB/TrEMBL
      A0A178V6M5, A0A5S9X923, A0A654F5B8, A0A7G2EHV9
      Conserved Domains (1) summary
      cd13132
      Location:37 → 472
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

    2. NM_001337478.1 → NP_001327451.1  MATE efflux family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J158, Q9SS64
      UniProtKB/TrEMBL
      A0A178V6M5, A0A5S9X923, A0A654F5B8, A0A7G2EHV9
      Conserved Domains (1) summary
      cd13132
      Location:37 → 472
      MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J158.1

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