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    Ribosomal protein S10p/S20e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820500, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein S10p/S20e family protein
    Primary source
    TAIR:AT3G13120
    Locus tag
    AT3G13120
    See related
    Araport:AT3G13120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (4219310..4221666, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene multidrug resistance-associated protein 7 Neighboring gene serine acetyltransferase 2;2 Neighboring gene uncharacterized protein Neighboring gene hydroxyproline-rich glycoprotein family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article
    2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202946.1
    NM_112151.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein S10p/S20e family protein
    NP_001189875.1
    • Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10 subgroup (InterPro:IPR005731), Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10 (InterPro:IPR001848).
    NP_187919.1
    • Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10 subgroup (InterPro:IPR005731), Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10 (InterPro:IPR001848); Has 8443 Blast hits to 8443 proteins in 2902 species: Archae - 264; Bacteria - 5393; Metazoa - 337; Fungi - 182; Plants - 190; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4219310..4221666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338033.1 → NP_001325784.1  Ribosomal protein S10p/S20e family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK61
      UniProtKB/TrEMBL
      A0A178V6X6, A0A5S9XBL5
      Conserved Domains (1) summary
      PRK00596
      Location:92 → 191
      rpsJ; 30S ribosomal protein S10; Reviewed

    2. NM_112151.4 → NP_187919.1  Ribosomal protein S10p/S20e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187919.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK61
      UniProtKB/TrEMBL
      A0A178V6X6, A0A5S9XBL5
      Conserved Domains (1) summary
      PRK00596
      Location:92 → 191
      rpsJ; 30S ribosomal protein S10; Reviewed

    3. NM_001202946.1 → NP_001189875.1  Ribosomal protein S10p/S20e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189875.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK61
      UniProtKB/TrEMBL
      A0A178V6X6, A0A5S9XBL5
      Conserved Domains (1) summary
      PRK00596
      Location:92 → 191
      rpsJ; 30S ribosomal protein S10; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LK61.1

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