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    ERD2B endoplasmic reticulum retention defective 2B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822095, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ERD2B
    Official Full Name
    endoplasmic reticulum retention defective 2B
    Primary source
    TAIR:AT3G25040
    Locus tag
    AT3G25040
    See related
    Araport:AT3G25040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    endoplasmic reticulum retention defective 2B
    Summary
    Encodes ERD2b. a homolog of the yeast endoplasmic reticulum retention receptor ERD2. Mutations in ERD2b compromise EFR but not FLS2 signaling.
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    Genomic context

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    See ERD2B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (9124270..9126377)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene receptor like protein 42 Neighboring gene RING/U-box superfamily protein Neighboring gene xyloglucan endotransglucosylase/hydrolase 3 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Specific ER quality control components required for biogenesis of the plant innate immune receptor EFR. Li J, et al. Proc Natl Acad Sci U S A, 2009 Sep 15. PMID 19717464, Free PMC Article
    2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113408.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ER retention sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein retention in ER lumen IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    endoplasmic reticulum retention defective 2B
    NP_566758.1
    • endoplasmic reticulum retention defective 2B (ERD2B); FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: defense response signaling pathway, resistance gene-independent, protein transport; LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G29330.1); Has 912 Blast hits to 910 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 322; Fungi - 187; Plants - 229; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9124270..9126377
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113408.4 → NP_566758.1  endoplasmic reticulum retention defective 2B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566758.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LD09, Q8VWI1, Q9LJR8
      UniProtKB/TrEMBL
      A0A178VH33, A0A5S9XFG5
      Conserved Domains (1) summary
      pfam00810
      Location:28 → 171
      ER_lumen_recept; ER lumen protein retaining receptor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VWI1.1

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