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    ATP synthase epsilon chain [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841590, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP synthase epsilon chain
    Primary source
    TAIR:AT1G51650
    Locus tag
    AT1G51650
    See related
    Araport:AT1G51650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (19152508..19154051)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene O-fucosyltransferase family protein Neighboring gene ncRNA Neighboring gene exocyst subunit exo70 family protein G2 Neighboring gene mitogen-activated protein kinase kinase 4 Neighboring gene uncharacterized protein Neighboring gene 4-coumarate:CoA ligase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The products of the mitochondrial orf25 and orfB genes are FO components in the plant F1FO ATP synthase. Heazlewood JL, et al. FEBS Lett, 2003 Apr 10. PMID 12681508
    2. Resolving and identifying protein components of plant mitochondrial respiratory complexes using three dimensions of gel electrophoresis. Meyer EH, et al. J Proteome Res, 2008 Feb. PMID 18189341
    3. The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions. Brugière S, et al. Phytochemistry, 2004 Jun. PMID 15276431
    4. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    5. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104043.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables proton-transporting ATP synthase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 
    part_of proton-transporting ATP synthase complex HDA PubMed 
    part_of proton-transporting ATP synthase complex, catalytic core F(1) IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ATP synthase epsilon chain
    NP_175576.1
    • ATP synthase epsilon chain, mitochondrial; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP biosynthetic process, ATP synthesis coupled proton transport; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, epsilon subunit, mitochondrial (InterPro:IPR006721); Has 247 Blast hits to 247 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 12; Plants - 69; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19152508..19154051
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104043.3 → NP_175576.1  ATP synthase epsilon chain [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175576.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q96253
      UniProtKB/TrEMBL
      A0A178W6M8, A0A5S9WNK2
      Conserved Domains (1) summary
      pfam04627
      Location:8 → 56
      ATP-synt_Eps; Mitochondrial ATP synthase epsilon chain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q96253.3

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