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    RBP31 31-kDa RNA binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828579, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RBP31
    Official Full Name
    31-kDa RNA binding protein
    Primary source
    TAIR:AT4G24770
    Locus tag
    AT4G24770
    See related
    Araport:AT4G24770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    31-kDa RNA binding protein; APPROXIMATELY 31 KD; ARABIDOPSIS THALIANA RNA BINDING PROTEIN; ATRBP31; ATRBP33; CP31; F6I7.11; STEP1
    Summary
    Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs.
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    Genomic context

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    See RBP31 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (12765761..12769419, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Rhodanese/Cell cycle control phosphatase superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene AAA-type ATPase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Arabidopsis chloroplast RNA-binding protein gene encodes multiple mRNAs with different 5' ends. Cheng SH, et al. Plant Physiol, 1994 Sep. PMID 7972518, Free PMC Article
    2. The acidic domain of the chloroplast RNA-binding protein CP31A supports cold tolerance in Arabidopsis thaliana. Okuzaki A, et al. J Exp Bot, 2021 Jun 22. PMID 33872351
    3. Arabidopsis chloroplast RNA binding proteins CP31A and CP29A associate with large transcript pools and confer cold stress tolerance by influencing multiple chloroplast RNA processing steps. Kupsch C, et al. Plant Cell, 2012 Oct. PMID 23110894, Free PMC Article
    4. Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs. Tillich M, et al. Proc Natl Acad Sci U S A, 2009 Apr 7. PMID 19297624, Free PMC Article
    5. Three types of nuclear genes encoding chloroplast RNA-binding proteins (cp29, cp31 and cp33) are present in Arabidopsis thaliana: presence of cp31 in chloroplasts and its homologue in nuclei/cytoplasms. Ohta M, et al. Plant Mol Biol, 1995 Feb. PMID 7894017

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The acidic domain of the chloroplast RNA-binding protein CP31A supports cold tolerance in Arabidopsis thaliana.
      Title: The acidic domain of the chloroplast RNA-binding protein CP31A supports cold tolerance in Arabidopsis thaliana.
    2. CP31A and CP29A associate with large, overlapping sets of chloroplast transcripts.
      Title: Arabidopsis chloroplast RNA binding proteins CP31A and CP29A associate with large transcript pools and confer cold stress tolerance by influencing multiple chloroplast RNA processing steps.
    3. null mutants of the cpRNP family member CP31A exhibit highly specific and diverse defects in chloroplast RNA metabolism
      Title: Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341706.1
    NM_118610.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables RNA binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables poly(U) RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within RNA processing TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within RNA stabilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within base conversion or substitution editing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cold acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within innate immune response IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    31-kDa RNA binding protein
    NP_194208.1
    • 31-kDa RNA binding protein (RBP31); FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: RNA modification, RNA processing, innate immune response; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1); Has 997248 Blast hits to 498569 proteins in 22111 species: Archae - 21618; Bacteria - 606023; Metazoa - 186637; Fungi - 27654; Plants - 60055; Viruses - 71042; Other Eukaryotes - 24219 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12765761..12769419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118610.4 → NP_194208.1  31-kDa RNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194208.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P92871, Q03394, Q04836, Q43350, Q94EH5
      UniProtKB/TrEMBL
      A0A178V4M1, A0A5S9XVY6
      Conserved Domains (2) summary
      cd21608
      Location:245 → 320
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
      cd21609
      Location:151 → 230
      RRM1_PSRP2_like; RNA recognition motif 1 (RRM1) found in chloroplastic plastid-specific 30S ribosomal protein 2 (PSRP-2) and similar proteins

    2. NM_001341706.1 → NP_001328008.1  31-kDa RNA binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P92871, Q03394, Q04836, Q43350, Q94EH5
      UniProtKB/TrEMBL
      A0A178V4M1, A0A5S9XVY6
      Conserved Domains (2) summary
      cd21608
      Location:245 → 320
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
      cd21609
      Location:151 → 230
      RRM1_PSRP2_like; RNA recognition motif 1 (RRM1) found in chloroplastic plastid-specific 30S ribosomal protein 2 (PSRP-2) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q04836.1

    Gene LinkOut

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