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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828746, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT4G26400
    Locus tag
    AT4G26400
    See related
    Araport:AT4G26400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    M3E9.170; M3E9_170
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (13344595..13346597, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Ile Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene tRNA-Ile Neighboring gene Pyruvate kinase family protein Neighboring gene chromosome-associated kinesin Neighboring gene uncharacterized protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EMR, a cytosolic-abundant ring finger E3 ligase, mediates ER-associated protein degradation in Arabidopsis. Park JH, et al. New Phytol, 2018 Oct. PMID 29932218
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_118773.4
    NM_179223.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_194370.2
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink).
    NP_849554.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13344595..13346597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179223.3 → NP_849554.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849554.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZG1, A0A654FSY3, Q8L5Z3
      Conserved Domains (2) summary
      cd16669
      Location:240 → 285
      RING-H2_RNF181; RING finger, H2 subclass, found in RING finger protein 181 (RNF181) and similar proteins
      pfam14369
      Location:4 → 35
      zinc_ribbon_9; zinc-ribbon

    2. NM_118773.4 → NP_194370.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194370.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZG1, A0A654FSY3, Q8L5Z3
      Conserved Domains (2) summary
      cd16669
      Location:240 → 285
      RING-H2_RNF181; RING finger, H2 subclass, found in RING finger protein 181 (RNF181) and similar proteins
      pfam14369
      Location:4 → 35
      zinc_ribbon_9; zinc-ribbon
    Nucleotide Protein
    Heading Accession and Version

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