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    Plant regulator RWP-RK family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829680, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant regulator RWP-RK family protein
    Primary source
    TAIR:AT4G35270
    Locus tag
    AT4G35270
    See related
    Araport:AT4G35270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23E12.170; F23E12_170; NIN-like protein 2; NLP2
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (16777264..16782054, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene isocitrate dehydrogenase 1 Neighboring gene C2H2-like zinc finger protein Neighboring gene glutamate receptor 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis transcription factor NLP2 regulates early nitrate responses and integrates nitrate assimilation with energy and carbon skeleton supply. Durand M, et al. Plant Cell, 2023 Apr 20. PMID 36752317, Free PMC Article
    2. Nitrate-responsive NIN-like protein transcription factors perform unique and redundant roles in Arabidopsis. Konishi M, et al. J Exp Bot, 2021 Jul 28. PMID 34050740
    3. Arabidopsis NIN-like transcription factors have a central role in nitrate signalling. Konishi M, et al. Nat Commun, 2013. PMID 23511481
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Arabidopsis transcription factor NLP2 regulates early nitrate responses and integrates nitrate assimilation with energy and carbon skeleton supply.
      Title: The Arabidopsis transcription factor NLP2 regulates early nitrate responses and integrates nitrate assimilation with energy and carbon skeleton supply.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001342332.1
    NM_001342333.1
    NM_001342334.1
    NM_119693.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables cis-regulatory region sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in energy homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in nitrate assimilation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in nitrate assimilation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in response to nitrate starvation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant regulator RWP-RK family protein
    NP_001320140.1
    • Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT2G17150.1); Has 705 Blast hits to 622 proteins in 59 species: Archae - 0; Bacteria - 9; Metazoa - 13; Fungi - 14; Plants - 585; Viruses - 3; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16777264..16782054 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342332.1 → NP_001320140.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JMB1, O65500, Q7X9B9
      UniProtKB/TrEMBL
      A0A178UYT3, A0A5S9XYS3, A0A654FVN8
      Conserved Domains (2) summary
      cd06407
      Location:864 → 944
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:648 → 696
      RWP-RK; RWP-RK domain

    2. NM_001342333.1 → NP_001328087.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JMB1, O65500, Q7X9B9
      UniProtKB/TrEMBL
      A0A178UYT3, A0A5S9XYS3, A0A654FVN8
      Conserved Domains (2) summary
      cd06407
      Location:864 → 944
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:648 → 696
      RWP-RK; RWP-RK domain

    3. NM_001342334.1 → NP_001328088.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JMB1, O65500, Q7X9B9
      UniProtKB/TrEMBL
      A0A178UYT3, A0A5S9XYS3, A0A654FVN8
      Conserved Domains (2) summary
      cd06407
      Location:864 → 944
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:648 → 696
      RWP-RK; RWP-RK domain

    4. NM_119693.5 → NP_195253.4  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195253.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JMB1, O65500, Q7X9B9
      UniProtKB/TrEMBL
      A0A178UYT3, A0A5S9XYS3, A0A654FVN8
      Conserved Domains (2) summary
      cd06407
      Location:864 → 944
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:648 → 696
      RWP-RK; RWP-RK domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X9B9.3

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