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    Ribosomal protein S5 domain 2-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823766, updated on 18-Sep-2024

    Summary

    Official Full Name
    Ribosomal protein S5 domain 2-like superfamily protein
    Primary source
    TAIR:AT3G46210
    Locus tag
    AT3G46210
    See related
    Araport:AT3G46210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (16976631..16978923, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene E3 UFM1-protein ligase-like protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene heat shock protein 17.4

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001035740.3
    NM_001035741.2
    NM_001035742.3
    NM_001084781.2
    NM_001203090.1
    NM_001339242.1
    NM_114490.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Ribosomal protein S5 domain 2-like superfamily protein
    NP_001030817.1
    • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001030818.1
    • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001030819.1
    • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078250.1
    • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 6526 Blast hits to 6524 proteins in 2015 species: Archae - 242; Bacteria - 4366; Metazoa - 314; Fungi - 210; Plants - 230; Viruses - 0; Other Eukaryotes - 1164 (source: NCBI BLink).
    NP_001190019.1
    • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1).
    NP_190207.1
    • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 6526 Blast hits to 6524 proteins in 2015 species: Archae - 242; Bacteria - 4366; Metazoa - 314; Fungi - 210; Plants - 230; Viruses - 0; Other Eukaryotes - 1164 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16976631..16978923 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084781.2NP_001078250.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078250.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LX74
      UniProtKB/TrEMBL
      A0A5S9XI99, A0A654FI86
      Conserved Domains (1) summary
      cd11372
      Location:14228
      RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
    2. NM_001203090.1NP_001190019.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190019.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LX74
      UniProtKB/TrEMBL
      A0A5S9XI99, A0A654FI86
      Conserved Domains (1) summary
      cd11372
      Location:14228
      RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
    3. NM_001035740.3NP_001030817.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030817.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LX74
      UniProtKB/TrEMBL
      A0A5S9XI99, A0A654FI86
      Conserved Domains (1) summary
      cd11372
      Location:14228
      RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
    4. NM_001035742.3NP_001030819.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030819.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LX74
      UniProtKB/TrEMBL
      A0A5S9XI99, A0A654FI86
      Conserved Domains (1) summary
      cd11372
      Location:14228
      RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
    5. NM_114490.3NP_190207.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190207.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LX74
      UniProtKB/TrEMBL
      A0A5S9XI99, A0A654FI86
      Conserved Domains (1) summary
      cd11372
      Location:14228
      RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
    6. NM_001035741.2NP_001030818.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030818.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LX74
      UniProtKB/TrEMBL
      A0A5S9XI99, A0A654FI86
      Conserved Domains (1) summary
      cd11372
      Location:14228
      RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
    7. NM_001339242.1NP_001325681.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LX74
      UniProtKB/TrEMBL
      A0A5S9XI99, A0A654FI86
      Conserved Domains (1) summary
      cd11372
      Location:14228
      RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome