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    CYP78A9 cytochrome p450 78a9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825361, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYP78A9
    Official Full Name
    cytochrome p450 78a9
    Primary source
    TAIR:AT3G61880
    Locus tag
    AT3G61880
    See related
    Araport:AT3G61880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cytochrome p450 78a9
    Summary
    Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.
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    Genomic context

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    See CYP78A9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (22905867..22907958, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene plant/protein Neighboring gene homeobox 12 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Toward understanding the role of CYP78A9 during Arabidopsis reproduction. Sotelo-Silveira M, et al. Plant Signal Behav, 2013 Aug. PMID 23733073, Free PMC Article
    2. Cytochrome P450 CYP78A9 is involved in Arabidopsis reproductive development. Sotelo-Silveira M, et al. Plant Physiol, 2013 Jun. PMID 23610218, Free PMC Article
    3. Overexpression of a gene encoding a cytochrome P450, CYP78A9, induces large and seedless fruit in arabidopsis. Ito T, et al. Plant Cell, 2000 Sep. PMID 11006330, Free PMC Article
    4. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, et al. Proc Natl Acad Sci U S A, 2007 Mar 13. PMID 17360592, Free PMC Article
    5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These results add new insights into the role of CYP78A9 in plant reproduction.
      Title: Toward understanding the role of CYP78A9 during Arabidopsis reproduction.
    2. the role of CYP78A9 in plant reproduction
      Title: Cytochrome P450 CYP78A9 is involved in Arabidopsis reproductive development.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203227.1
    NM_116053.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables monooxygenase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fruit development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within fruit development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in seed development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    cytochrome p450 78a9
    NP_001190156.1
    • cytochrome p450 78a9 (CYP78A9); FUNCTIONS IN: monooxygenase activity, oxygen binding; INVOLVED IN: fruit development; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, flower development stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 78, subfamily A, polypeptide 6 (TAIR:AT2G46660.1).
    NP_191747.1
    • cytochrome p450 78a9 (CYP78A9); FUNCTIONS IN: monooxygenase activity, oxygen binding; INVOLVED IN: fruit development; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, flower development stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 78, subfamily A, polypeptide 6 (TAIR:AT2G46660.1); Has 32342 Blast hits to 32220 proteins in 1730 species: Archae - 48; Bacteria - 3539; Metazoa - 11622; Fungi - 6799; Plants - 9227; Viruses - 3; Other Eukaryotes - 1104 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22905867..22907958 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116053.3 → NP_191747.1  cytochrome p450 78a9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191747.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBY2, Q9SLP1
      UniProtKB/TrEMBL
      A0A178V6J4, A0A5S9XMX4, A0A7G2EUL5
      Conserved Domains (1) summary
      cd11076
      Location:99 → 522
      CYP78; cytochrome P450 family 78

    2. NM_001203227.1 → NP_001190156.1  cytochrome p450 78a9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190156.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XMX4, A0A7G2EUL5, F4IX02
      Conserved Domains (1) summary
      cl12078
      Location:56 → 529
      p450; Cytochrome P450
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SLP1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.