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    RNA-directed DNA polymerase (reverse transcriptase) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830284, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-directed DNA polymerase (reverse transcriptase)
    Primary source
    TAIR:AT5G04050
    Locus tag
    AT5G04050
    See related
    Araport:AT5G04050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8F6.260; F8F6_260
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (1096016..1099042)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Putative membrane lipoprotein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene cysteine-rich TM module stress tolerance protein Neighboring gene histidine-tRNA ligase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. nMAT3 is an essential maturase splicing factor required for holo-complex I biogenesis and embryo development in Arabidopsis thaliana plants. Shevtsov-Tal S, et al. Plant J, 2021 May. PMID 33683754
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001161223.1
    NM_120487.7

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in RNA splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-directed DNA polymerase (reverse transcriptase)
    NP_001154695.1
    • RNA-directed DNA polymerase (reverse transcriptase); FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT1G74350.1); Has 3089 Blast hits to 3057 proteins in 1086 species: Archae - 3; Bacteria - 2166; Metazoa - 8; Fungi - 43; Plants - 770; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
    NP_196025.5
    • RNA-directed DNA polymerase (reverse transcriptase); FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT1G74350.1); Has 3461 Blast hits to 3086 proteins in 1121 species: Archae - 3; Bacteria - 2166; Metazoa - 4; Fungi - 43; Plants - 1152; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1096016..1099042
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120487.7 → NP_196025.5  RNA-directed DNA polymerase (reverse transcriptase) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196025.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KI47
      Conserved Domains (1) summary
      cd01651
      Location:99 → 357
      RT_G2_intron; RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable ...

    2. NM_001161223.1 → NP_001154695.1  RNA-directed DNA polymerase (reverse transcriptase) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154695.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KI46, Q9LZA5
      Conserved Domains (1) summary
      cd01651
      Location:99 → 357
      RT_G2_intron; RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable ...
    Nucleotide Protein
    Heading Accession and Version

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