U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    thylakoid lumen 15.0 kDa protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835375, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    thylakoid lumen 15.0 kDa protein
    Primary source
    TAIR:AT5G52970
    Locus tag
    AT5G52970
    See related
    Araport:AT5G52970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNB8.3; MNB8_3
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (21479382..21481256)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tRNA dimethylallyltransferase Neighboring gene egg cell-secreted-like protein (DUF1278) Neighboring gene egg cell-secreted-like protein (DUF1278) Neighboring gene ER-based factor for assembly of V-ATPase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
    2. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Peltier JB, et al. Plant Cell, 2002 Jan. PMID 11826309, Free PMC Article
    3. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001345017.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid lumen HDA PubMed 
    located_in thylakoid HDA PubMed 
    located_in thylakoid lumen HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    thylakoid lumen 15.0 kDa protein
    NP_001318791.1
    • thylakoid lumen 15.0 kDa protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21479382..21481256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124675.3 → NP_568781.1  thylakoid lumen 15.0 kDa protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568781.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AF5, Q9LVV5
      UniProtKB/TrEMBL
      A0A5S9YDH4
      Conserved Domains (2) summary
      COG1512
      Location:53 → 152
      YgcG; Uncharacterized membrane protein YgcG, contains a TPM-fold domain [Function unknown]
      pfam04536
      Location:92 → 140
      TPM_phosphatase; TPM domain

    2. NM_001345017.1 → NP_001318791.1  thylakoid lumen 15.0 kDa protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AF5, Q9LVV5
      UniProtKB/TrEMBL
      A0A5S9YDH4
      Conserved Domains (2) summary
      COG1512
      Location:53 → 152
      YgcG; Uncharacterized membrane protein YgcG, contains a TPM-fold domain [Function unknown]
      pfam04536
      Location:92 → 140
      TPM_phosphatase; TPM domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVV5.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools