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    egg cell-secreted-like protein (DUF1278) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835376, updated on 18-Sep-2024

    Summary

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    Official Full Name
    egg cell-secreted-like protein (DUF1278)
    Primary source
    TAIR:AT5G52975
    Locus tag
    AT5G52975
    See related
    Araport:AT5G52975
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (21481457..21482038)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene egg cell-secreted-like protein (DUF1278) Neighboring gene thylakoid lumen 15.0 kDa protein Neighboring gene ER-based factor for assembly of V-ATPase Neighboring gene SNARE-like superfamily protein Neighboring gene 2A phosphatase associated protein of 46 kD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124676.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    egg cell-secreted-like protein (DUF1278)
    NP_568782.1
    • Protein of unknown function (DUF1278); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT5G52965.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21481457..21482038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124676.3 → NP_568782.1  egg cell-secreted-like protein (DUF1278) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568782.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YDM7, A0A654GAD8, Q147K7, Q8LG99
      Conserved Domains (1) summary
      cl05275
      Location:1 → 118
      Prolamin_like; Prolamin-like
    Nucleotide Protein
    Heading Accession and Version

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