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    CHCH domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836561, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CHCH domain protein
    Primary source
    TAIR:AT5G64400
    Locus tag
    AT5G64400
    See related
    Araport:AT5G64400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSJ1.24; MSJ1_24
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (25747856..25750830)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene beta-ureidopropionase Neighboring gene Inositol monophosphatase family protein Neighboring gene RNA-binding KH domain-containing protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene oligopeptide transporter 4 Neighboring gene DNA polymerase V family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Inactivation of Mitochondrial Complex I Induces the Expression of a Twin Cysteine Protein that Targets and Affects Cytosolic, Chloroplastidic and Mitochondrial Function. Wang Y, et al. Mol Plant, 2016 May 2. PMID 26829715
    2. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, et al. Proc Natl Acad Sci U S A, 2007 Mar 13. PMID 17360592, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001037060.1
    NM_001345627.1
    NM_125836.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to abiotic stimulus IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CHCH domain protein
    NP_001032137.1
    • BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 127 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
    NP_201245.1
    • CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25747856..25750830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125836.4 → NP_201245.1  CHCH domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201245.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEN0, Q9FME9
      Conserved Domains (1) summary
      pfam06747
      Location:103 → 137
      CHCH; CHCH domain

    2. NM_001345627.1 → NP_001331367.1  CHCH domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDN9

    3. NM_001037060.1 → NP_001032137.1  CHCH domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032137.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KDN4
    Nucleotide Protein
    Heading Accession and Version

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