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    AGP1 arabinogalactan protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836552, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGP1
    Official Full Name
    arabinogalactan protein 1
    Primary source
    TAIR:AT5G64310
    Locus tag
    AT5G64310
    See related
    Araport:AT5G64310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arabinogalactan protein 1; ARABINOGALACTAN-PROTEIN 1; ATAGP1; MSJ1.15; MSJ1_15
    Summary
    Encodes arabinogalactan-protein (AGP1).
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    Genomic context

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    See AGP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (25721733..25722678)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene dicarboxylate transport 2.1 Neighboring gene GTP cyclohydrolase II Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene transcription factor SAC51

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_125827.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arabinogalactan protein 1
    NP_201236.1
    • arabinogalactan protein 1 (AGP1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25721733..25722678
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125827.3 → NP_201236.1  arabinogalactan protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201236.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCN5, Q94A23, Q9ZT19
      UniProtKB/TrEMBL
      A0A178UMN6, A0A5S9YGW6
      Conserved Domains (1) summary
      NF033930
      Location:23 → 102
      pneumo_PspA; pneumococcal surface protein A
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LCN5.2

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