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    XND1 xylem NAC domain 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836574, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XND1
    Official Full Name
    xylem NAC domain 1
    Primary source
    TAIR:AT5G64530
    Locus tag
    AT5G64530
    See related
    Araport:AT5G64530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ANAC104; Arabidopsis NAC domain containing protein 104; MUB3.5; MUB3_5; xylem NAC domain 1
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    Genomic context

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    See XND1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (25794957..25797031)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene homolog of X-ray repair cross complementing 2 (XRCC2) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene mucin-like protein Neighboring gene loricrin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. XND1 Regulates Secondary Wall Deposition in Xylem Vessels through the Inhibition of VND Functions. Zhong R, et al. Plant Cell Physiol, 2021 Mar 25. PMID 33764471
    2. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Tang N, et al. Nat Commun, 2018 Sep 24. PMID 30250259, Free PMC Article
    3. XND1, a member of the NAC domain family in Arabidopsis thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem. Zhao C, et al. Plant J, 2008 Feb. PMID 18069942
    4. Modulation of NAC transcription factor NST1 activity by XYLEM NAC DOMAIN1 regulates secondary cell wall formation in Arabidopsis. Zhang Q, et al. J Exp Bot, 2020 Feb 19. PMID 31740956
    5. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. Zhao C, et al. New Phytol, 2017 Oct. PMID 28742236

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Modulation of NAC transcription factor NST1 activity by XYLEM NAC DOMAIN1 regulates secondary cell wall formation in Arabidopsis.
      Title: Modulation of NAC transcription factor NST1 activity by XYLEM NAC DOMAIN1 regulates secondary cell wall formation in Arabidopsis.
    2. XND1 Regulates Secondary Wall Deposition in Xylem Vessels through the Inhibition of VND Functions.
      Title: XND1 Regulates Secondary Wall Deposition in Xylem Vessels through the Inhibition of VND Functions.
    3. Study identifies XYLEM NAC DOMAIN 1 (XND1) as a key negative regulator of Arabidopsis root hydraulics at the species-wide level and reveals how genetic variation at XND1 may contribute to the trade-off between abiotic stress tolerance and biotic defense in Arabidopsis.
      Title: Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    4. XND1 harbors an apparently angiosperm-specific combination of interaction motifs potentially linking the general differentiation regulator RBR with a xylem-specific pathway for inhibition of differentiation.
      Title: XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    5. Findings suggest that XND1 affects tracheary element growth through regulation of secondary wall synthesis and programmed cell death.
      Title: XND1, a member of the NAC domain family in Arabidopsis thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001345642.1
    NM_125849.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of programmed cell death IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within shoot system development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within xylem development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    xylem NAC domain 1
    NP_201258.2
    • xylem NAC domain 1 (XND1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 25 (TAIR:AT1G61110.1); Has 2741 Blast hits to 2738 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2741; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25794957..25797031
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125849.4 → NP_201258.2  xylem NAC domain 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201258.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWK6, Q9FLG5
      UniProtKB/TrEMBL
      A0A178UC01, A0A5S9YHQ6, A0A7G2FLP2
      Conserved Domains (1) summary
      pfam02365
      Location:4 → 118
      NAM; No apical meristem (NAM) protein

    2. NM_001345642.1 → NP_001332105.1  xylem NAC domain 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFW3
      Conserved Domains (1) summary
      pfam02365
      Location:4 → 118
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GWK6.1

    Gene LinkOut

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