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    spindle assembly abnormal protein (DUF620) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836807, updated on 18-Sep-2024

    Summary

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    Official Full Name
    spindle assembly abnormal protein (DUF620)
    Primary source
    TAIR:AT5G66740
    Locus tag
    AT5G66740
    See related
    Araport:AT5G66740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSN2.13; MSN2_13
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (26646900..26648731)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2-like zinc finger protein Neighboring gene ncRNA Neighboring gene chromatin remodeling 1 Neighboring gene tRNA-Glu

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RHO OF PLANT proteins are essential for pollen germination in Arabidopsis. Xiang X, et al. Plant Physiol, 2023 Aug 31. PMID 36974907
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RHO OF PLANT proteins are essential for pollen germination in Arabidopsis.
      Title: RHO OF PLANT proteins are essential for pollen germination in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_126072.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    spindle assembly abnormal protein (DUF620)
    NP_201475.4
    • Protein of unknown function (DUF620); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT1G75160.1); Has 213 Blast hits to 212 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 211; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26646900..26648731
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126072.5 → NP_201475.4  spindle assembly abnormal protein (DUF620) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201475.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMH1, A0A5S9YHX1, F4K243
      Conserved Domains (1) summary
      pfam04788
      Location:124 → 363
      DUF620; Protein of unknown function (DUF620)
    Nucleotide Protein
    Heading Accession and Version

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