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    RAP2.1 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841117, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RAP2.1
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT1G46768
    Locus tag
    AT1G46768
    See related
    Araport:AT1G46768
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G19.32; F2G19_32; related to AP2 1
    Summary
    encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.
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    Genomic context

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    See RAP2.1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (17265586..17266824, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene hypothetical protein (Protein of unknown function, DUF601) Neighboring gene F-box family protein Neighboring gene F-box associated ubiquitination effector family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis EAR-motif-containing protein RAP2.1 functions as an active transcriptional repressor to keep stress responses under tight control. Dong CJ, et al. BMC Plant Biol, 2010 Mar 16. PMID 20230648, Free PMC Article
    2. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RAP2.1 is a DREB-type, EAR-motif-containing transcriptional repressor that negatively regulates plant responses to cold and drought stresses.
      Title: The Arabidopsis EAR-motif-containing protein RAP2.1 functions as an active transcriptional repressor to keep stress responses under tight control.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103607.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001322275.1
    • related to AP2 1
    NP_001322276.1
    • related to AP2 1
    NP_564496.1
    • related to AP2 1 (RAP2.1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 10 (TAIR:AT4G36900.1); Has 5681 Blast hits to 5559 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5675; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17265586..17266824 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333266.1 → NP_001322275.1  uncharacterized protein AT1G46768 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8X3, A0A1P8ATH8, A0A384KYA3, A0A7G2DVV2
      Conserved Domains (1) summary
      smart00380
      Location:31 → 93
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

    2. NM_001333265.1 → NP_001322276.1  uncharacterized protein AT1G46768 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23103, Q42165, Q8LC30, Q9C630
      UniProtKB/TrEMBL
      A0A178WAW3, A0A7G2DVV2
      Conserved Domains (1) summary
      smart00380
      Location:31 → 93
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

    3. NM_103607.4 → NP_564496.1  uncharacterized protein AT1G46768 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564496.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23103, Q42165, Q8LC30, Q9C630
      UniProtKB/TrEMBL
      A0A178WAW3, A0A7G2DVV2
      Conserved Domains (1) summary
      smart00380
      Location:31 → 93
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LC30.1

    Gene LinkOut

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