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    Ubl5b ubiquitin-like 5B [ Mus musculus (house mouse) ]

    Gene ID: 100042786, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ubl5bprovided by MGI
    Official Full Name
    ubiquitin-like 5Bprovided by MGI
    Primary source
    MGI:MGI:3648256
    See related
    Ensembl:ENSMUSG00000113489 AllianceGenome:MGI:3648256
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm16381; EG435336
    Summary
    Predicted to enable protein tag activity. Predicted to be involved in mRNA splicing, via spliceosome and protein modification process. Predicted to be active in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Ubl5b in Genome Data Viewer
    Location:
    12 D2; 12 41.88 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (87690888..87695753, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (87644118..87648983, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 1A domain containing 6 Neighboring gene GLE1 RNA export mediator pseudogene Neighboring gene STARR-seq mESC enhancer starr_32894 Neighboring gene predicted gene, 21937 Neighboring gene predicted gene, 21559

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein tag activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein modification process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166062.2NP_001159534.1  ubiquitin-like 5-like

      See identical proteins and their annotated locations for NP_001159534.1

      Status: VALIDATED

      Source sequence(s)
      AC126554
      Consensus CDS
      CCDS49125.1
      UniProtKB/TrEMBL
      A0A1Y7VKT9
      Related
      ENSMUSP00000152141.2, ENSMUST00000220528.3
      Conserved Domains (1) summary
      cd01791
      Location:171
      Ubl_UBL5; ubiquitin-like (Ubl) domain found in ubiquitin-like protein 5 (UBL5) and similar proteins

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      87690888..87695753 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)