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    4930438A08Rik RIKEN cDNA 4930438A08 gene [ Mus musculus (house mouse) ]

    Gene ID: 73988, updated on 27-Dec-2024

    Summary

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    Official Symbol
    4930438A08Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930438A08 geneprovided by MGI
    Primary source
    MGI:MGI:1921238
    See related
    Ensembl:ENSMUSG00000069873 AllianceGenome:MGI:1921238
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable L-amino-acid oxidase activity. Predicted to be involved in amino acid catabolic process. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in liver E18 (RPKM 2.1), stomach adult (RPKM 1.5) and 8 other tissues See more
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    Genomic context

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    See 4930438A08Rik in Genome Data Viewer
    Location:
    11 B1.3; 11 36.19 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (58165654..58185116)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (58274828..58294290)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8408 Neighboring gene immunity-related GTPase family M member 2 Neighboring gene predicted gene, 51898 Neighboring gene STARR-seq mESC enhancer starr_29602 Neighboring gene piggyBac transposable element derived 2 (Pgbd2) pseudogene Neighboring gene predicted gene, 39827 Neighboring gene predicted gene, 53708 Neighboring gene nuclear encoded tRNA glutamic acid 10 (anticodon CTC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables L-amino-acid oxidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC73988

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001374705.1 → NP_001361634.1  uncharacterized protein LOC73988 precursor

      Status: VALIDATED

      Source sequence(s)
      AL928857
      Consensus CDS
      CCDS88160.1
      UniProtKB/TrEMBL
      Q5SPH3
      Related
      ENSMUSP00000104462.3, ENSMUST00000108834.3
      Conserved Domains (2) summary
      PRK12779
      Location:42 → 98
      PRK12779; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
      pfam01593
      Location:71 → 512
      Amino_oxidase; Flavin containing amine oxidoreductase

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      58165654..58185116
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017314866.3 → XP_017170355.1  uncharacterized protein LOC73988 isoform X1

      UniProtKB/TrEMBL
      Q9CUM6
      Conserved Domains (1) summary
      COG1231
      Location:17 → 283
      YobN; Monoamine oxidase [Amino acid transport and metabolism]
    Nucleotide Protein Strain
    Heading Accession and Version

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