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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_016976.2 RefSeqGene
- Range
-
18328..206762
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001172509.2 → NP_001165980.1 DNA-binding protein SATB2
See identical proteins and their annotated locations for NP_001165980.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
- Source sequence(s)
-
AC016746, AK056638
- Consensus CDS
-
CCDS2327.1
- UniProtKB/Swiss-Prot
- A8K5Z8, Q3ZB87, Q4V763, Q9UPW6
- UniProtKB/TrEMBL
-
B3KPQ9
- Related
- ENSP00000401112.1, ENST00000417098.6
- Conserved Domains (4) summary
-
- smart00389
Location:614 → 671
- HOX; Homeodomain
- cd11585
Location:60 → 155
- SATB1_N; N-terminal domain of SATB1 and similar proteins
- pfam02376
Location:477 → 556
- CUT; CUT domain
- pfam16557
Location:162 → 232
- CUTL; CUT1-like DNA-binding domain of SATB
-
NM_001172517.1 → NP_001165988.1 DNA-binding protein SATB2
See identical proteins and their annotated locations for NP_001165988.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
- Source sequence(s)
-
AB209376, AC016746
- Consensus CDS
-
CCDS2327.1
- UniProtKB/Swiss-Prot
- A8K5Z8, Q3ZB87, Q4V763, Q9UPW6
- UniProtKB/TrEMBL
-
B3KPQ9
- Related
- ENSP00000260926.5, ENST00000260926.9
- Conserved Domains (4) summary
-
- smart00389
Location:614 → 671
- HOX; Homeodomain
- cd11585
Location:60 → 155
- SATB1_N; N-terminal domain of SATB1 and similar proteins
- pfam02376
Location:477 → 556
- CUT; CUT domain
- pfam16557
Location:162 → 232
- CUTL; CUT1-like DNA-binding domain of SATB
-
NM_015265.4 → NP_056080.1 DNA-binding protein SATB2
See identical proteins and their annotated locations for NP_056080.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
- Source sequence(s)
-
AC016746, AK291463
- Consensus CDS
-
CCDS2327.1
- UniProtKB/Swiss-Prot
- A8K5Z8, Q3ZB87, Q4V763, Q9UPW6
- UniProtKB/TrEMBL
-
B3KPQ9
- Related
- ENSP00000405420.1, ENST00000457245.5
- Conserved Domains (4) summary
-
- smart00389
Location:614 → 671
- HOX; Homeodomain
- cd11585
Location:60 → 155
- SATB1_N; N-terminal domain of SATB1 and similar proteins
- pfam02376
Location:477 → 556
- CUT; CUT domain
- pfam16557
Location:162 → 232
- CUTL; CUT1-like DNA-binding domain of SATB
RNA
-
NR_134967.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 3' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC016746, AJ438951, AK056638
- Related
-
ENST00000440919.1
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
199269500..199471266 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005246396.4 → XP_005246453.1 DNA-binding protein SATB2 isoform X2
- UniProtKB/TrEMBL
-
B3KPQ9
- Conserved Domains (4) summary
-
- smart00389
Location:556 → 613
- HOX; Homeodomain
- cd11585
Location:2 → 97
- SATB1_N; N-terminal domain of SATB1 and similar proteins
- pfam02376
Location:419 → 497
- CUT; CUT domain
- pfam16557
Location:128 → 175
- CUTL; CUT1-like DNA-binding domain of SATB
-
XM_047443775.1 → XP_047299731.1 DNA-binding protein SATB2 isoform X1
- UniProtKB/Swiss-Prot
- A8K5Z8, Q3ZB87, Q4V763, Q9UPW6
- UniProtKB/TrEMBL
-
B3KPQ9
- Related
- ENSP00000514854.1, ENST00000700193.1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
199753552..199955035 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054341120.1 → XP_054197095.1 DNA-binding protein SATB2 isoform X1
- UniProtKB/Swiss-Prot
- A8K5Z8, Q3ZB87, Q4V763, Q9UPW6
- UniProtKB/TrEMBL
-
B3KPQ9
-
XM_054341121.1 → XP_054197096.1 DNA-binding protein SATB2 isoform X2
- UniProtKB/TrEMBL
-
B3KPQ9
-
XM_054341122.1 → XP_054197097.1 DNA-binding protein SATB2 isoform X3
- UniProtKB/TrEMBL
-
C9JR56
-
XM_054341123.1 → XP_054197098.1 DNA-binding protein SATB2 isoform X3
- UniProtKB/TrEMBL
-
C9JR56