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    Batf3 basic leucine zipper transcription factor, ATF-like 3 [ Mus musculus (house mouse) ]

    Gene ID: 381319, updated on 9-Dec-2024

    Summary

    Official Symbol
    Batf3provided by MGI
    Official Full Name
    basic leucine zipper transcription factor, ATF-like 3provided by MGI
    Primary source
    MGI:MGI:1925491
    See related
    Ensembl:ENSMUSG00000026630 AllianceGenome:MGI:1925491
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Snft; 9130211I03Rik
    Summary
    Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in myeloid dendritic cell differentiation and response to virus. Predicted to be located in cytosol; nucleolus; and nucleoplasm. Predicted to be part of RNA polymerase II transcription regulator complex. Predicted to be active in nucleus. Is expressed in central nervous system and female associated reproductive structure. Orthologous to human BATF3 (basic leucine zipper ATF-like transcription factor 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in spleen adult (RPKM 8.6), mammary gland adult (RPKM 6.6) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Batf3 in Genome Data Viewer
    Location:
    1 H6; 1 96.28 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (190830611..190841140)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (191098414..191108943)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 45 Neighboring gene TatD DNase domain containing 3 Neighboring gene STARR-positive B cell enhancer ABC_E4404 Neighboring gene NSL1, MIS12 kinetochore complex component Neighboring gene predicted gene, 46178 Neighboring gene predicted gene, 31640

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (5) 
    • Targeted (2)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of RNA polymerase II transcription regulator complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    basic leucine zipper transcriptional factor ATF-like 3
    Names
    B-ATF-3
    Jun dimerization protein p21SNFT

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030060.2NP_084336.1  basic leucine zipper transcriptional factor ATF-like 3

      See identical proteins and their annotated locations for NP_084336.1

      Status: PROVISIONAL

      Source sequence(s)
      AK020278
      Consensus CDS
      CCDS15615.1
      UniProtKB/Swiss-Prot
      Q9D275
      Related
      ENSMUSP00000027943.5, ENSMUST00000027943.6
      Conserved Domains (2) summary
      cd14686
      Location:3182
      bZIP; coiled coil [structural motif]
      cl21462
      Location:2885
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      190830611..190841140
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)