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    Gm16499 predicted gene 16499 [ Mus musculus (house mouse) ]

    Gene ID: 100049166, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm16499provided by MGI
    Official Full Name
    predicted gene 16499provided by MGI
    Primary source
    MGI:MGI:3704267
    See related
    Ensembl:ENSMUSG00000108175 AllianceGenome:MGI:3704267
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm43938
    Expression
    Biased expression in testis adult (RPKM 1.4), cerebellum adult (RPKM 0.3) and 2 other tissues See more
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    Genomic context

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    See Gm16499 in Genome Data Viewer
    Location:
    6 B3; 6 26.08 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (53800711..53835998)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (53844899..53858947)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L7A pseudogene Neighboring gene STARR-seq mESC enhancer starr_15934 Neighboring gene TLR4 interactor with leucine-rich repeats Neighboring gene STARR-seq mESC enhancer starr_15935 Neighboring gene STARR-seq mESC enhancer starr_15936 Neighboring gene STARR-seq mESC enhancer starr_15937 Neighboring gene predicted gene, 22910 Neighboring gene predicted gene, 33716 Neighboring gene carboxypeptidase, vitellogenic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      53800711..53835998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004933817.1 RNA Sequence

    2. XR_001785253.2 RNA Sequence

      Related
      ENSMUST00000373596.1

    3. XR_001785255.2 RNA Sequence

      Related
      ENSMUST00000373597.1

    4. XR_001785254.2 RNA Sequence

      Related
      ENSMUST00000373594.1

    5. XR_001785256.2 RNA Sequence

      Related
      ENSMUST00000373595.1
    Nucleotide Protein Strain
    Heading Accession and Version

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