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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_047156.1 RefSeqGene
- Range
-
4974..1342910
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001243270.2 → NP_001230199.1 contactin-5 isoform 1 precursor
See identical proteins and their annotated locations for NP_001230199.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an exon in the 5' non-coding region, thus has a shorter 5' UTR compared to variant 1. Variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AB013802, AK308788, AP001892, AP002428, BC130619, BM697855, BU737133, BX090703, R26700
- Consensus CDS
-
CCDS53696.1
- UniProtKB/Swiss-Prot
- A1L4P0, B7ZM07, E9PKE8, O94779, O94780, Q49AF3
- UniProtKB/TrEMBL
-
B7ZM08
- Related
- ENSP00000436185.1, ENST00000528682.5
- Conserved Domains (6) summary
-
- cd04969
Location:496 → 568
- Ig5_Contactin_like; Fifth Ig domain of contactin
- cd05848
Location:98 → 191
- Ig1_Contactin-5; First Ig domain of contactin-5
- smart00410
Location:205 → 278
- IG_like; Immunoglobulin like
- cd00063
Location:671 → 768
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:489 → 568
- I-set; Immunoglobulin I-set domain
- cl11960
Location:300 → 387
- Ig; Immunoglobulin domain
-
NM_001243271.2 → NP_001230200.1 contactin-5 isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs at the 3' end compared to variant 1. This results in a frame-shift, and a shorter isoform (3) with a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AK308788, AP002428, BC039255
- Consensus CDS
-
CCDS58168.1
- UniProtKB/TrEMBL
-
B7ZM08
- Related
- ENSP00000433575.1, ENST00000527185.5
- Conserved Domains (5) summary
-
- cd05848
Location:98 → 191
- Ig1_Contactin-5; First Ig domain of contactin-5
- smart00410
Location:205 → 278
- IG_like; Immunoglobulin like
- cd00063
Location:671 → 768
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:489 → 568
- I-set; Immunoglobulin I-set domain
- cl11960
Location:300 → 387
- Ig; Immunoglobulin domain
-
NM_014361.4 → NP_055176.1 contactin-5 isoform 1 precursor
See identical proteins and their annotated locations for NP_055176.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript, and encodes the longest isoform (1, also known as long isoform). Variants 1 and 2 encode the same isoform.
- Source sequence(s)
-
AB013802, AK308788, AP001892, AP002428, BC130619, BM697855, BU737133, BX090703, R26700
- Consensus CDS
-
CCDS53696.1
- UniProtKB/Swiss-Prot
- A1L4P0, B7ZM07, E9PKE8, O94779, O94780, Q49AF3
- UniProtKB/TrEMBL
-
B7ZM08
- Related
- ENSP00000435637.1, ENST00000524871.6
- Conserved Domains (6) summary
-
- cd04969
Location:496 → 568
- Ig5_Contactin_like; Fifth Ig domain of contactin
- cd05848
Location:98 → 191
- Ig1_Contactin-5; First Ig domain of contactin-5
- smart00410
Location:205 → 278
- IG_like; Immunoglobulin like
- cd00063
Location:671 → 768
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:489 → 568
- I-set; Immunoglobulin I-set domain
- cl11960
Location:300 → 387
- Ig; Immunoglobulin domain
-
NM_175566.2 → NP_780775.1 contactin-5 isoform 2 precursor
See identical proteins and their annotated locations for NP_780775.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an in-frame coding exon compared to variant 1. This results in a shorter isoform (2, also known as short isoform) missing an internal protein segment compared to isoform 1.
- Source sequence(s)
-
AB013803, AP001892, BM697855, BU737133, BX090703, R26700
- Consensus CDS
-
CCDS53697.1
- UniProtKB/TrEMBL
-
B7ZM08
- Related
- ENSP00000393229.2, ENST00000418526.6
- Conserved Domains (6) summary
-
- cd04969
Location:422 → 494
- Ig5_Contactin_like; Fifth Ig domain of contactin
- cd05848
Location:24 → 117
- Ig1_Contactin-5; First Ig domain of contactin-5
- smart00410
Location:131 → 204
- IG_like; Immunoglobulin like
- cd00063
Location:597 → 694
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:415 → 494
- I-set; Immunoglobulin I-set domain
- cl11960
Location:226 → 313
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
99020949..100358885
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017017926.2 → XP_016873415.1 contactin-5 isoform X1
- UniProtKB/Swiss-Prot
- A1L4P0, B7ZM07, E9PKE8, O94779, O94780, Q49AF3
- UniProtKB/TrEMBL
-
B7ZM08
- Conserved Domains (6) summary
-
- cd04969
Location:496 → 568
- Ig5_Contactin_like; Fifth Ig domain of contactin
- cd05848
Location:98 → 191
- Ig1_Contactin-5; First Ig domain of contactin-5
- smart00410
Location:205 → 278
- IG_like; Immunoglobulin like
- cd00063
Location:671 → 768
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:489 → 568
- I-set; Immunoglobulin I-set domain
- cl11960
Location:300 → 387
- Ig; Immunoglobulin domain
-
XM_011542871.2 → XP_011541173.1 contactin-5 isoform X2
See identical proteins and their annotated locations for XP_011541173.1
- UniProtKB/TrEMBL
-
B7ZM08
- Conserved Domains (6) summary
-
- cd04969
Location:422 → 494
- Ig5_Contactin_like; Fifth Ig domain of contactin
- cd05848
Location:24 → 117
- Ig1_Contactin-5; First Ig domain of contactin-5
- smart00410
Location:131 → 204
- IG_like; Immunoglobulin like
- cd00063
Location:597 → 694
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:415 → 494
- I-set; Immunoglobulin I-set domain
- cl11960
Location:226 → 313
- Ig; Immunoglobulin domain
-
XM_047427130.1 → XP_047283086.1 contactin-5 isoform X2
- UniProtKB/TrEMBL
-
B7ZM08
-
XM_047427131.1 → XP_047283087.1 contactin-5 isoform X4
-
XM_017017927.2 → XP_016873416.1 contactin-5 isoform X3
- Conserved Domains (5) summary
-
- cd04969
Location:496 → 568
- Ig5_Contactin_like; Fifth Ig domain of contactin
- cd05848
Location:98 → 191
- Ig1_Contactin-5; First Ig domain of contactin-5
- smart00410
Location:205 → 278
- IG_like; Immunoglobulin like
- pfam07679
Location:489 → 568
- I-set; Immunoglobulin I-set domain
- cl11960
Location:300 → 387
- Ig; Immunoglobulin domain
-
XM_011542873.2 → XP_011541175.1 contactin-5 isoform X3
- Conserved Domains (5) summary
-
- cd04969
Location:496 → 568
- Ig5_Contactin_like; Fifth Ig domain of contactin
- cd05848
Location:98 → 191
- Ig1_Contactin-5; First Ig domain of contactin-5
- smart00410
Location:205 → 278
- IG_like; Immunoglobulin like
- pfam07679
Location:489 → 568
- I-set; Immunoglobulin I-set domain
- cl11960
Location:300 → 387
- Ig; Immunoglobulin domain
-
XM_017017929.2 → XP_016873418.1 contactin-5 isoform X5
-
XM_017017928.2 → XP_016873417.1 contactin-5 isoform X3
- Conserved Domains (5) summary
-
- cd04969
Location:496 → 568
- Ig5_Contactin_like; Fifth Ig domain of contactin
- cd05848
Location:98 → 191
- Ig1_Contactin-5; First Ig domain of contactin-5
- smart00410
Location:205 → 278
- IG_like; Immunoglobulin like
- pfam07679
Location:489 → 568
- I-set; Immunoglobulin I-set domain
- cl11960
Location:300 → 387
- Ig; Immunoglobulin domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
99027636..100368160
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054369144.1 → XP_054225119.1 contactin-5 isoform X1
- UniProtKB/TrEMBL
-
B7ZM08
-
XM_054369145.1 → XP_054225120.1 contactin-5 isoform X2
- UniProtKB/TrEMBL
-
B7ZM08
-
XM_054369146.1 → XP_054225121.1 contactin-5 isoform X2
- UniProtKB/TrEMBL
-
B7ZM08
-
XM_054369150.1 → XP_054225125.1 contactin-5 isoform X4
-
XM_054369148.1 → XP_054225123.1 contactin-5 isoform X3
-
XM_054369147.1 → XP_054225122.1 contactin-5 isoform X3
-
XM_054369151.1 → XP_054225126.1 contactin-5 isoform X5
-
XM_054369149.1 → XP_054225124.1 contactin-5 isoform X3