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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001184714.2 → NP_001171643.1 SLAM family member 6 isoform 1 precursor
See identical proteins and their annotated locations for NP_001171643.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AK125624, AY358159, DB197632
- Consensus CDS
-
CCDS53394.1
- UniProtKB/Swiss-Prot
- A6NMW2, B2R8X8, Q14CF0, Q5TAS4, Q5TAS6, Q5TAT3, Q96DU3, Q96DV0
- UniProtKB/TrEMBL
-
B4E1U5
- Related
- ENSP00000357036.3, ENST00000368057.8
- Conserved Domains (1) summary
-
- cd16842
Location:32 → 126
- Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family
-
NM_001184715.2 → NP_001171644.1 SLAM family member 6 isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses multiple alternate splice sites in the coding region, compared to variant 1, which result in an isoform (3) with a shorter extracellular domain than isoform 1.
- Source sequence(s)
-
AJ277141, AK125624, AK303990
- UniProtKB/TrEMBL
-
B4E1U5
- Conserved Domains (2) summary
-
- pfam13927
Location:102 → 150
- Ig_3; Immunoglobulin domain
- cl11960
Location:3 → 78
- Ig; Immunoglobulin domain
-
NM_001184716.2 → NP_001171645.1 SLAM family member 6 isoform 4 precursor
See identical proteins and their annotated locations for NP_001171645.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an alternate exon in the 5' coding region, compared to variant 1, which result in an isoform (4) with a shorter extracellular domain than isoform 1.
- Source sequence(s)
-
AK125624, AK301026, AW402723, DB197632
- Consensus CDS
-
CCDS53393.1
- UniProtKB/Swiss-Prot
-
Q96DU3
- Related
- ENSP00000357034.1, ENST00000368055.1
-
NM_052931.5 → NP_443163.1 SLAM family member 6 isoform 2 precursor
See identical proteins and their annotated locations for NP_443163.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, compared to variant 1, which results in an isoform (2) that is one amino acid shorter than isoform 1.
- Source sequence(s)
-
AK125624, BC113893, DB197632
- Consensus CDS
-
CCDS1205.1
- UniProtKB/TrEMBL
-
B4E1U5
- Related
- ENSP00000357038.3, ENST00000368059.7
- Conserved Domains (3) summary
-
- cd05775
Location:32 → 127
- Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
- smart00410
Location:34 → 126
- IG_like; Immunoglobulin like
- pfam13927
Location:151 → 199
- Ig_3; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
160485036..160523255 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017000216.2 → XP_016855705.1 SLAM family member 6 isoform X2
- UniProtKB/TrEMBL
-
B4E1U5
-
XM_047443866.1 → XP_047299822.1 SLAM family member 6 isoform X1
- UniProtKB/TrEMBL
-
B4E1U5
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
159622119..159660340 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054334140.1 → XP_054190115.1 SLAM family member 6 isoform X2
- UniProtKB/TrEMBL
-
B4E1U5
-
XM_054334139.1 → XP_054190114.1 SLAM family member 6 isoform X1
- UniProtKB/TrEMBL
-
B4E1U5