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    LINC02198 long intergenic non-protein coding RNA 2198 [ Homo sapiens (human) ]

    Gene ID: 101928885, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02198provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2198provided by HGNC
    Primary source
    HGNC:HGNC:53064
    See related
    AllianceGenome:HGNC:53064
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02198 in Genome Data Viewer
    Location:
    5q13.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (68967741..69029927, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (69790202..69852381, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (68263568..68325754, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene U8 small nucleolar RNA Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:68194494-68195693 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:68217653-68218234 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:68218235-68218815 Neighboring gene uncharacterized LOC105379015 Neighboring gene uncharacterized LOC107984116 Neighboring gene RN7SK pseudogene 251 Neighboring gene NFE2L2 motif-containing MPRA enhancer 182 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:68357823-68358534 Neighboring gene leucine rich repeat containing 3C pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr5:68370875-68371043 Neighboring gene SUMO2 pseudogene 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_130778.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093248

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      68967741..69029927 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      69790202..69852381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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