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    KIF23-AS1 KIF23 and PAQR5 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 145694, updated on 10-Dec-2024

    Summary

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    Official Symbol
    KIF23-AS1provided by HGNC
    Official Full Name
    KIF23 and PAQR5 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:27075
    See related
    Ensembl:ENSG00000259426 AllianceGenome:HGNC:27075
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in kidney (RPKM 7.9), adrenal (RPKM 3.0) and 14 other tissues See more
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    Genomic context

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    See KIF23-AS1 in Genome Data Viewer
    Location:
    15q23
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (69396904..69415029, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (67218981..67237106, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (69689243..69707368, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene PAQR5 divergent transcript Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:69597275-69598474 Neighboring gene progestin and adipoQ receptor family member 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:69610145-69610644 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:69615648-69615826 Neighboring gene small nucleolar RNA SNORA77 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:69634596-69635096 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:69635097-69635597 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:69673828-69674009 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:69680714-69681358 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6598 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6599 Neighboring gene kinesin family member 23 Neighboring gene fumarylacetoacetate hydrolase domain containing 1 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9655 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6600 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9656 Neighboring gene long intergenic non-protein coding RNA 2896 Neighboring gene ribosomal protein lateral stalk subunit P1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132969.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC027237, AK056793, DB499817, DB570961

    2. NR_132970.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate internal exon and uses an alternate 3' terminal exon compared to variant 1.
      Source sequence(s)
      AK056793, BX097197, CN360125
      Related
      ENST00000558617.2

    3. NR_132971.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate 3' terminal exon compared to variant 1.
      Source sequence(s)
      AK056793, BX097197, CN360125
      Related
      ENST00000560539.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      69396904..69415029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      67218981..67237106 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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