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    Hmgb4os high-mobility group box 4, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 75242, updated on 22-Oct-2024

    Summary

    Official Symbol
    Hmgb4osprovided by MGI
    Official Full Name
    high-mobility group box 4, opposite strandprovided by MGI
    Primary source
    MGI:MGI:1922492
    See related
    Ensembl:ENSMUSG00000085717 AllianceGenome:MGI:1922492
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930546G22Rik
    Expression
    Restricted expression toward testis adult (RPKM 4.5) See more
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    Genomic context

    See Hmgb4os in Genome Data Viewer
    Location:
    4 D2.2; 4 61.97 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (128154837..128156783)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (128261044..128262990)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene cDNA sequence CK137956 Neighboring gene predicted gene, 38571 Neighboring gene CUB and Sushi multiple domains 2 Neighboring gene STARR-seq mESC enhancer starr_11450 Neighboring gene STARR-seq mESC enhancer starr_11451 Neighboring gene STARR-seq mESC enhancer starr_11452 Neighboring gene high-mobility group box 4 Neighboring gene STARR-seq mESC enhancer starr_11453 Neighboring gene predicted gene, 33656 Neighboring gene STARR-positive B cell enhancer ABC_E839 Neighboring gene zinc finger and SCAN domains 20

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Other Names

    • Hmgb4 opposite strand transcript

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_130980.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL807807
      Related
      ENSMUST00000308312.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      128154837..128156783
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)