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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001033439.3 → NP_001028611.2 leucine-rich repeat and calponin homology domain-containing protein 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AC135083, AC154621, BB612742, BC028469
- Consensus CDS
-
CCDS36976.1
- UniProtKB/Swiss-Prot
- E9QLJ4, P62046
- UniProtKB/TrEMBL
-
Q3UP01
- Related
- ENSMUSP00000086363.6, ENSMUST00000088970.7
- Conserved Domains (4) summary
-
- cd00116
Location:106 → 220
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:66 → 88
- LRR_RI; leucine-rich repeat [structural motif]
- pfam00307
Location:591 → 698
- CH; Calponin homology (CH) domain
- pfam13855
Location:178 → 258
- LRR_8; Leucine rich repeat
-
NM_001252132.1 → NP_001239061.1 leucine-rich repeat and calponin homology domain-containing protein 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.
- Source sequence(s)
-
AK143909, AK160965, BB612742, BC028469
- Consensus CDS
-
CCDS88714.1
- UniProtKB/TrEMBL
- A0A2I3BQ16, Q3UP01
- Related
- ENSMUSP00000154004.2, ENSMUST00000228252.2
- Conserved Domains (4) summary
-
- cd00116
Location:106 → 220
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:66 → 88
- LRR_RI; leucine-rich repeat [structural motif]
- pfam00307
Location:564 → 671
- CH; Calponin homology (CH) domain
- pfam13855
Location:178 → 258
- LRR_8; Leucine rich repeat
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000080.7 Reference GRCm39 C57BL/6J
- Range
-
74992113..75185447 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017316067.2 → XP_017171556.2 leucine-rich repeat and calponin homology domain-containing protein 1 isoform X6
- UniProtKB/TrEMBL
-
Q3UP01
- Conserved Domains (4) summary
-
- PRK15370
Location:162 → 365
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- smart00033
Location:702 → 807
- CH; Calponin homology domain
- sd00031
Location:376 → 387
- LRR_1; leucine-rich repeat [structural motif]
- sd00033
Location:167 → 189
- LRR_RI; leucine-rich repeat [structural motif]
-
XM_006519156.3 → XP_006519219.3 leucine-rich repeat and calponin homology domain-containing protein 1 isoform X4
- UniProtKB/TrEMBL
-
Q3UP01
- Conserved Domains (4) summary
-
- PRK15370
Location:162 → 365
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- smart00033
Location:729 → 834
- CH; Calponin homology domain
- sd00031
Location:376 → 387
- LRR_1; leucine-rich repeat [structural motif]
- sd00033
Location:167 → 189
- LRR_RI; leucine-rich repeat [structural motif]
-
XM_036158691.1 → XP_036014584.1 leucine-rich repeat and calponin homology domain-containing protein 1 isoform X8
- UniProtKB/TrEMBL
-
Q3UP01
- Conserved Domains (5) summary
-
- PRK15370
Location:162 → 365
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- COG5271
Location:402 → 655
- MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
- sd00031
Location:376 → 387
- LRR_1; leucine-rich repeat [structural motif]
- sd00033
Location:167 → 189
- LRR_RI; leucine-rich repeat [structural motif]
- cd21270
Location:635 → 746
- CH_LRCH1; calponin homology (CH) domain found in leucine-rich repeat and calponin homology domain-containing protein 1
-
XM_036158690.1 → XP_036014583.1 leucine-rich repeat and calponin homology domain-containing protein 1 isoform X3
- UniProtKB/TrEMBL
-
Q3UP01
- Conserved Domains (4) summary
-
- PRK15370
Location:162 → 365
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- sd00031
Location:376 → 387
- LRR_1; leucine-rich repeat [structural motif]
- sd00033
Location:167 → 189
- LRR_RI; leucine-rich repeat [structural motif]
- cd21270
Location:697 → 808
- CH_LRCH1; calponin homology (CH) domain found in leucine-rich repeat and calponin homology domain-containing protein 1
-
XM_006519158.4 → XP_006519221.3 leucine-rich repeat and calponin homology domain-containing protein 1 isoform X7
- UniProtKB/TrEMBL
-
Q3UP01
- Conserved Domains (4) summary
-
- PRK15370
Location:162 → 365
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- smart00033
Location:667 → 756
- CH; Calponin homology domain
- sd00031
Location:376 → 387
- LRR_1; leucine-rich repeat [structural motif]
- sd00033
Location:167 → 189
- LRR_RI; leucine-rich repeat [structural motif]
-
XM_006519155.4 → XP_006519218.3 leucine-rich repeat and calponin homology domain-containing protein 1 isoform X2
- UniProtKB/TrEMBL
-
Q3UP01
- Conserved Domains (4) summary
-
- PRK15370
Location:162 → 365
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- smart00033
Location:702 → 791
- CH; Calponin homology domain
- sd00031
Location:376 → 387
- LRR_1; leucine-rich repeat [structural motif]
- sd00033
Location:167 → 189
- LRR_RI; leucine-rich repeat [structural motif]
-
XM_006519157.4 → XP_006519220.3 leucine-rich repeat and calponin homology domain-containing protein 1 isoform X5
- UniProtKB/TrEMBL
-
Q3UP01
- Conserved Domains (4) summary
-
- PRK15370
Location:162 → 365
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- smart00033
Location:694 → 783
- CH; Calponin homology domain
- sd00031
Location:376 → 387
- LRR_1; leucine-rich repeat [structural motif]
- sd00033
Location:167 → 189
- LRR_RI; leucine-rich repeat [structural motif]
-
XM_006519154.4 → XP_006519217.3 leucine-rich repeat and calponin homology domain-containing protein 1 isoform X1
- UniProtKB/TrEMBL
-
Q3UP01
- Conserved Domains (4) summary
-
- PRK15370
Location:162 → 365
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- smart00033
Location:729 → 818
- CH; Calponin homology domain
- sd00031
Location:376 → 387
- LRR_1; leucine-rich repeat [structural motif]
- sd00033
Location:167 → 189
- LRR_RI; leucine-rich repeat [structural motif]
-
XM_036158693.1 → XP_036014586.1 leucine-rich repeat and calponin homology domain-containing protein 1 isoform X10
- Conserved Domains (1) summary
-
- cd21270
Location:382 → 493
- CH_LRCH1; calponin homology (CH) domain found in leucine-rich repeat and calponin homology domain-containing protein 1
-
XM_036158692.1 → XP_036014585.1 leucine-rich repeat and calponin homology domain-containing protein 1 isoform X9
- Conserved Domains (3) summary
-
- sd00031
Location:2 → 22
- LRR_1; leucine-rich repeat [structural motif]
- pfam13855
Location:1 → 78
- LRR_8; Leucine rich repeat
- cd21270
Location:446 → 557
- CH_LRCH1; calponin homology (CH) domain found in leucine-rich repeat and calponin homology domain-containing protein 1
RNA
-
XR_001781129.2 RNA Sequence