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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818394, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT2G38160
    Locus tag
    AT2G38160
    See related
    Araport:AT2G38160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16M14.9; F16M14_9
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (15986390..15988775, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene alpha 1,4-glycosyltransferase family protein Neighboring gene alpha 1,4-glycosyltransferase family protein Neighboring gene cation exchanger 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Basic Proline-Rich Protein-Mediated Microtubules Are Essential for Lobe Growth and Flattened Cell Geometry. Wong JH, et al. Plant Physiol, 2019 Dec. PMID 31601644, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202771.2
    NM_001336690.1
    NM_001336691.1
    NM_001336692.1
    NM_001336693.1
    NM_129372.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001189700.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.2).
    NP_181351.5
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.2); Has 972 Blast hits to 731 proteins in 211 species: Archae - 0; Bacteria - 236; Metazoa - 194; Fungi - 201; Plants - 218; Viruses - 32; Other Eukaryotes - 91 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15986390..15988775 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202771.2 → NP_001189700.1  uncharacterized protein AT2G38160 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189700.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X537, F4IS02
      Conserved Domains (1) summary
      pfam05109
      Location:96 → 241
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    2. NM_001336690.1 → NP_001324844.1  uncharacterized protein AT2G38160 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VX31, A0A1P8B1C2, A0A384L7H2, A0A5S9X537

    3. NM_129372.6 → NP_181351.5  uncharacterized protein AT2G38160 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181351.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X537, F4IS02
      Conserved Domains (1) summary
      pfam05109
      Location:96 → 241
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    4. NM_001336692.1 → NP_001324842.1  uncharacterized protein AT2G38160 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1D9

    5. NM_001336691.1 → NP_001324843.1  uncharacterized protein AT2G38160 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1H2

    6. NM_001336693.1 → NP_001324841.1  uncharacterized protein AT2G38160 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VX31, A0A1P8B1C2, A0A384L7H2, A0A5S9X537
    Nucleotide Protein
    Heading Accession and Version

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