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    proton-dependent oligopeptide transport (POT) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818388, updated on 18-Sep-2024

    Summary

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    Official Full Name
    proton-dependent oligopeptide transport (POT) family protein
    Primary source
    TAIR:AT2G38100
    Locus tag
    AT2G38100
    See related
    Araport:AT2G38100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16M14.3; F16M14_3
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (15948418..15950994, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Laccase/Diphenol oxidase family protein Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene glycerol-3-phosphate acyltransferase 6 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis NPF3 protein is a GA transporter. Tal I, et al. Nat Commun, 2016 May 3. PMID 27139299, Free PMC Article
    2. AtNPF5.5, a nitrate transporter affecting nitrogen accumulation in Arabidopsis embryo. Léran S, et al. Sci Rep, 2015 Jan 22. PMID 25608465, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables dipeptide transmembrane transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables uracil transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within dipeptide transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within nitrate transmembrane transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    proton-dependent oligopeptide transport (POT) family protein
    NP_181345.1
    • proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: amino acid transmembrane transporter activity, uracil transmembrane transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109); BEST Arabidopsis thaliana protein match is: peptide transporter 5 (TAIR:AT5G01180.1); Has 2766 Blast hits to 2715 proteins in 326 species: Archae - 0; Bacteria - 547; Metazoa - 329; Fungi - 2; Plants - 1871; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15948418..15950994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336687.1 → NP_001324907.1  proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VXF6, A0A1P8B1J5

    2. NM_001336688.1 → NP_001324906.1  proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VXF6, A0A1P8B1I6
      Conserved Domains (1) summary
      cl28910
      Location:24 → 507
      MFS; Major Facilitator Superfamily

    3. NM_129366.1 → NP_181345.1  proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181345.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80436
      UniProtKB/TrEMBL
      A0A178VXF6
      Conserved Domains (1) summary
      cl21472
      Location:62 → 409
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80436.1

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