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    FRS3 FAR1-related sequence 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817253, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FRS3
    Official Full Name
    FAR1-related sequence 3
    Primary source
    TAIR:AT2G27110
    Locus tag
    AT2G27110
    See related
    Araport:AT2G27110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FAR1-related sequence 3; T20P8.16; T20P8_16
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    Genomic context

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    See FRS3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (11576668..11580817, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene bZIP transcription factor (DUF630 and DUF632) Neighboring gene C2H2 zinc-finger protein SERRATE (SE) Neighboring gene DNA polymerase epsilon catalytic subunit Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036351.2
    NM_128269.4
    NM_179767.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    FAR1-related sequence 3
    NP_001031428.1
    • FAR1-related sequence 3 (FRS3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), MULE transposase, conserved domain (InterPro:IPR018289); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565636.1
    • FAR1-related sequence 3 (FRS3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transcription factor, FAR1-related (InterPro:IPR004330), MULE transposase, conserved domain (InterPro:IPR018289); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1433 Blast hits to 1269 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 39; Plants - 1388; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_850098.1
    • FAR1-related sequence 3 (FRS3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transcription factor, FAR1-related (InterPro:IPR004330), MULE transposase, conserved domain (InterPro:IPR018289); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1433 Blast hits to 1269 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 39; Plants - 1388; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11576668..11580817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128269.4 → NP_565636.1  FAR1-related sequence 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565636.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V450, Q93ZJ5, Q9ZVC9
      UniProtKB/TrEMBL
      A0A5S9X1L2, A0A654EY46
      Conserved Domains (1) summary
      PLN03097
      Location:1 → 630
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

    2. NM_179767.2 → NP_850098.1  FAR1-related sequence 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850098.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V450, Q93ZJ5, Q9ZVC9
      UniProtKB/TrEMBL
      A0A5S9X1L2, A0A654EY46
      Conserved Domains (1) summary
      PLN03097
      Location:1 → 630
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

    3. NM_001036351.2 → NP_001031428.1  FAR1-related sequence 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031428.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1D9, B9DH05
      Conserved Domains (2) summary
      PLN03097
      Location:24 → 485
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam07258
      Location:637 → 690
      COMM_domain; COMM domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVC9.2

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