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    SPOC domain / Transcription elongation factor S-II protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817105, updated on 18-Sep-2024

    Summary

    Official Full Name
    SPOC domain / Transcription elongation factor S-II protein
    Primary source
    TAIR:AT2G25640
    Locus tag
    AT2G25640
    See related
    Araport:AT2G25640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3N11.9; F3N11_9
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    Genomic context

    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (10910461..10914547)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene histone deacetylase-like protein Neighboring gene beta glucosidase 14 Neighboring gene DNA-binding storekeeper protein-related transcriptional regulator Neighboring gene embryo defective 2410 Neighboring gene uncharacterized protein

    General gene information

    NM_001336006.1
    NM_128123.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    SPOC domain / Transcription elongation factor S-II protein
    NP_180135.2
    • SPOC domain / Transcription elongation factor S-II protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1); Has 1179 Blast hits to 1045 proteins in 235 species: Archae - 0; Bacteria - 202; Metazoa - 503; Fungi - 239; Plants - 160; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10910461..10914547
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128123.3NP_180135.2  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180135.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4ISL5, Q682K2
      Conserved Domains (2) summary
      smart00510
      Location:290390
      TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
      pfam07744
      Location:599705
      SPOC; SPOC domain
    2. NM_001336006.1NP_001324087.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZ23, Q9SL99
      Conserved Domains (2) summary
      smart00510
      Location:290390
      TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
      pfam07744
      Location:591660
      SPOC; SPOC domain