LOG3 lysine decarboxylase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: LOG3
Official Full Name: lysine decarboxylase family protein
Primary source: TAIR:AT2G37210
Locus tag: AT2G37210
See related: Araport:AT2G37210
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: LONELY GUY 3; T2N18.3; T2N18_3
Summary: Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.
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Genomic context

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See LOG3 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 8

Sequence:: Chromosome: 2; NC_003071.7 (15623928..15627032, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

LOG7 was required for the maintenance of shoot apical meristem size. LOG7 was also suggested to play a role for normal primary root growth together with LOG3 and LOG4.
Title: Arabidopsis lonely guy (LOG) multiple mutants reveal a central role of the LOG-dependent pathway in cytokinin activation.
Results strongly suggest that the direct activation pathway via LOGs plays a pivotal role in regulating cytokinin activity during normal growth and development. A Multiple Insertion Mutant, log3 log4 log7, Shows Altered Root and Shoot Morphology.
Title: Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis.
X-ray crystal structures of the conserved hypothetical proteins from Arabidopsis thaliana gene loci AT2g37210.
Title: X-ray crystal structures of the conserved hypothetical proteins from Arabidopsis thaliana gene loci At5g11950 and AT2g37210.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001202767.1

Supported by ESTs:

NM_129277.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables cytokinin riboside 5'-monophosphate phosphoribohydrolase activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within cytokinin biosynthetic process	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in cytosol	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: lysine decarboxylase family protein

NP_001189696.1

lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT3G53450.1).

NP_181258.2

lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT3G53450.1); Has 5502 Blast hits to 5500 proteins in 1566 species: Archae - 27; Bacteria - 3836; Metazoa - 10; Fungi - 132; Plants - 402; Viruses - 0; Other Eukaryotes - 1095 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

15623928..15627032 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_129277.3 → NP_181258.2 lysine decarboxylase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_181258.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8L8B8, Q9ZQD5

UniProtKB/TrEMBL

A0A178W1Y0, A0A5S9X4R1, A0A654FGC4

Conserved Domains (1) summary

pfam03641
Location:58 → 187

Lysine_decarbox; Possible lysine decarboxylase
NM_001202767.1 → NP_001189696.1 lysine decarboxylase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001189696.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FGC4, F4IQ18

Conserved Domains (1) summary

pfam03641
Location:58 → 211

Lysine_decarbox; Possible lysine decarboxylase