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    SNARE-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816627, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNARE-like superfamily protein
    Primary source
    TAIR:AT2G20930
    Locus tag
    AT2G20930
    See related
    Araport:AT2G20930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5H14.10; F5H14_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (9000450..9001837, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene chaperone (DUF3353) Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (DUF1279) Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene phospholipase-like protein (PEARLI 4) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_127662.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNARE-like superfamily protein
    NP_565493.1
    • SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT1G80500.1); Has 516 Blast hits to 516 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 97; Plants - 87; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9000450..9001837 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127662.4 → NP_565493.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565493.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLL4, Q8LC63, Q9SKS7
      Conserved Domains (1) summary
      cd14854
      Location:3 → 135
      TRAPPC2L; Trafficking protein particle complex subunit 2-like
    Nucleotide Protein
    Heading Accession and Version

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