U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842000, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT1G55530
    Locus tag
    AT1G55530
    See related
    Araport:AT1G55530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5A14.7; T5A14_7
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (20729125..20731356, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene branched-chain alpha-keto acid decarboxylase E1 beta subunit Neighboring gene TATA binding protein 2 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Nuclear pore complex protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001333718.1
    NM_001333719.1
    NM_104428.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RING/U-box superfamily protein
    NP_564693.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13430.3); Has 11045 Blast hits to 10950 proteins in 292 species: Archae - 0; Bacteria - 8; Metazoa - 3210; Fungi - 1082; Plants - 5106; Viruses - 41; Other Eukaryotes - 1598 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20729125..20731356 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104428.4 → NP_564693.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564693.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJI6, A0A5S9WRY6, Q9ZVU8
      Conserved Domains (2) summary
      pfam13639
      Location:222 → 264
      zf-RING_2; Ring finger domain
      pfam14369
      Location:7 → 39
      zinc_ribbon_9; zinc-ribbon

    2. NM_001333718.1 → NP_001321432.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJI6, A0A5S9WRY6, Q9ZVU8

    3. NM_001333719.1 → NP_001321433.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQV3, A0A7G2E0W9
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.