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    HCP-like superfamily protein with MYND-type zinc finger [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843055, updated on 18-Sep-2024

    Summary

    Official Full Name
    HCP-like superfamily protein with MYND-type zinc finger
    Primary source
    TAIR:AT1G67340
    Locus tag
    AT1G67340
    See related
    Araport:AT1G67340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1N21.16
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (25230239..25231943)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene NADH-ubiquinone oxidoreductase Neighboring gene Rubber elongation factor protein (REF) Neighboring gene ncRNA Neighboring gene DNA-binding HORMA family protein

    Interactions

    General gene information

    NM_105402.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    HCP-like superfamily protein with MYND-type zinc finger
    NP_564894.1
    • HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25230239..25231943
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105402.3 → NP_564894.1  HCP-like superfamily protein with MYND-type zinc finger [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564894.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FYF9
      UniProtKB/TrEMBL
      A0A654EM43
      Conserved Domains (3) summary
      COG0790
      Location:117 → 230
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:106 → 130
      SLR; SLR repeat [structural motif]
      pfam01753
      Location:305 → 346
      zf-MYND; MYND finger
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