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    XIA myosin XI A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839480, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XIA
    Official Full Name
    myosin XI A
    Primary source
    TAIR:AT1G04600
    Locus tag
    AT1G04600
    See related
    Araport:AT1G04600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATXIA; myosin XI A; T1G11.15; T1G11_15
    Summary
    member of Myosin-like proteins
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    Genomic context

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    See XIA in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    42
    Sequence:
    Chromosome: 1; NC_003070.9 (1261762..1272588)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene aldehyde oxidase 4 Neighboring gene PPR containing-like protein Neighboring gene YUCCA 3 Neighboring gene coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence. Reddy AS, et al. Genome Biol, 2001. PMID 11516337, Free PMC Article
    2. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100339.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cytoskeletal motor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within actin filament-based movement TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myosin XI A
    NP_171954.1
    • myosin XI A (XIA); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Prefoldin (InterPro:IPR009053), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin XI D (TAIR:AT2G33240.1); Has 140144 Blast hits to 79260 proteins in 3527 species: Archae - 2295; Bacteria - 25176; Metazoa - 58445; Fungi - 12073; Plants - 6566; Viruses - 744; Other Eukaryotes - 34845 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1261762..1272588
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100339.2 → NP_171954.1  myosin XI A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171954.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I5Q6, O23025
      UniProtKB/TrEMBL
      A0A654E8U0
      Conserved Domains (4) summary
      PRK02224
      Location:865 → 1229
      PRK02224; DNA double-strand break repair Rad50 ATPase
      cd15475
      Location:1278 → 1699
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:75 → 719
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:10 → 47
      Myosin_N; Myosin N-terminal SH3-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I5Q6.1

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