U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Polynucleotidyl transferase, ribonuclease H-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 3766658, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Primary source
    TAIR:AT1G04625
    Locus tag
    AT1G04625
    See related
    Araport:AT1G04625
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (1287831..1289820, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene YUCCA 3 Neighboring gene coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family Neighboring gene GRIM-19 protein Neighboring gene ribonuclease P family protein / Rpp14 family protein Neighboring gene lipoyltransferase 2 Neighboring gene Plant self-incompatibility protein S1 family

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001160831.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    NP_001154303.1
    • Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G46460.1); Has 296 Blast hits to 296 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1287831..1289820 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160831.1 → NP_001154303.1  Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154303.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WHZ4, A0A654EHF8, F4I5Q9
      Conserved Domains (1) summary
      pfam13456
      Location:93 → 211
      RVT_3; Reverse transcriptase-like
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools